Usman Roshan

发表

Challenges in predicting glioma survival time in multi-modal deep networks

Abdulrhman Aljouie, Yunzhe Xue, Meiyan Xie, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

Abdulrhman Aljouie, Usman Roshan, Nihir Patel, 2016, Int. J. Data Min. Bioinform..

Stochastic Coordinate Descent for 01 Loss and Its Sensitivity to Adversarial Attacks

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2019, 2019 18th IEEE International Conference On Machine Learning And Applications (ICMLA).

Improved phylogenetic motif detection using parsimony

Dennis R. Livesay, Usman Roshan, David La, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

Sequence-Length Requirements for Phylogenetic Methods

Tandy J. Warnow, Bernard M. E. Moret, Usman Roshan, 2002, WABI.

A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent

Tao Wu, Usman Roshan, Barry Cohen, 2011 .

Statistically Rigorous Testing of Clustering Implementations

Vincenzo Musco, Iulian Neamtiu, Xin Yin, 2019, 2019 IEEE International Conference On Artificial Intelligence Testing (AITest).

PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction

John M. Mellor-Crummey, Luay Nakhleh, Cristian Coarfa, 2005, 11th International Conference on Parallel and Distributed Systems (ICPADS'05).

High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

Abdulrhman Aljouie, Usman Roshan, Ling Zhong, 2020, Int. J. Comput. Biol. Drug Des..

Towards adversarial robustness with 01 loss neural networks pdf

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2020, 2020 19th IEEE International Conference on Machine Learning and Applications (ICMLA).

Probalign: multiple sequence alignment using partition function posterior probabilities

Dennis R. Livesay, Usman Roshan, Usman Roshan, 2006, Bioinform..

PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction

John M. Mellor-Crummey, Luay Nakhleh, Cristian Coarfa, 2005, ICPADS.

Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities

Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan, 2008, BMC Bioinformatics.

Diametrical clustering for identifying anti-correlated gene clusters

Inderjit S. Dhillon, Edward M. Marcotte, Usman Roshan, 2003, Bioinform..

Cross-validation and cross-study validation of chronic lymphocytic leukemia with exome sequences and machine learning

Abdulrhman Aljouie, Usman Roshan, Nihir Patel, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Prediction of Continuous Phenotypes in Mouse, Fly, and Rice Genome Wide Association Studies with Support Vector Regression SNPs and Ridge Regression Classifier

Abdulrhman Aljouie, Usman Roshan, Usman Roshan, 2015, 2015 IEEE 14th International Conference on Machine Learning and Applications (ICMLA).

Accurate and adversarially robust classification of medical images and ECG time-series with gradient-free trained sign activation neural networks

Frank Y. Shih, Yunzhe Xue, Usman Roshan, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees

Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

Weighted Maximum Variance Dimensionality Reduction

Turki Turki, Usman Roshan, Usman Roshan, 2014, MCPR.

Algorithmic techniques for improving the speed and accuracy of phylogenetic methods

Tandy Warnow, Usman Roshan, T. Warnow, 2004 .

Cross-validation and cross-study validation of kidney cancer with machine learning and whole exome sequences from the National Cancer Institute

Abdulrhman Aljouie, Usman Roshan, Nihir Patel, 2018, 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees

Tandy J. Warnow, Bernard M. E. Moret, Usman Roshan, 2004, IEEE Computer Society Computational Systems Bioinformatics Conference.

Estimating the Deviation from a Molecular Clock

Tandy J. Warnow, Luay Nakhleh, Usman Roshan, 2002, WABI.

Image Classification and Retrieval with Random Depthwise Signed Convolutional Neural Networks

Yunzhe Xue, Usman Roshan, Usman Roshan, 2018, IWANN.

Designing fast converging phylogenetic methods

Tandy J. Warnow, Luay Nakhleh, Katherine St. John, 2001, ISMB.

Multi-path convolutional neural network for glioblastoma survival group prediction with point mutations and demographic features

Abdulrhman Aljouie, Usman Roshan, Usman Roshan, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Top-k Parametrized Boost

Zhi Wei, Turki Turki, Muhammad Ihsan, 2014, MIKE.

eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities

Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan, 2007, Nucleic Acids Res..

Robust binary classification with the 01 loss pdf

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2020, ArXiv.

Random depthwise signed convolutional neural networks pdf

Yunzhe Xue, Usman Roshan, 2018, ArXiv.

Exploring Classification, Clustering, and Its Limits in a Compressed Hidden Space of a Single Layer Neural Network with Random Weights

Meiyan Xie, Usman Roshan, Usman Roshan, 2019, IWANN.

PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences

Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan, 2010, Nucleic Acids Res..

Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood

Alexandros Stamatakis, Luay Nakhleh, F. Lin, 2005, HPCC.

Vessel lumen segmentation in carotid artery ultrasounds with the U-Net convolutional neural network

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan, 2014 .

Defending against substitute model black box adversarial attacks with the 01 loss pdf

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2020, ArXiv.

Multiple sequence alignment using Probcons and Probalign.

Usman Roshan, Usman Roshan, 2014, Methods in molecular biology.

Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family

Dennis R. Livesay, Usman Roshan, Patrick D. Kidd, 2007, BMC Bioinformatics.

On the transferability of adversarial examples between convex and 01 loss models pdf

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2020, 2020 19th IEEE International Conference on Machine Learning and Applications (ICMLA).

The Performance of Phylogenetic Methods on Trees of Bounded Diameter

Tandy J. Warnow, Luay Nakhleh, Katherine St. John, 2001, WABI.

The Accuracy of Fast Phylogenetic Methods for Large Datasets

Tandy J. Warnow, Bernard M. E. Moret, Luay Nakhleh, 2001, Pacific Symposium on Biocomputing.

Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions

David A. Bader, Alexandros Stamatakis, Usman Roshan, 2006, Adv. Comput..

Defending against black-box adversarial attacks with gradient-free trained sign activation neural networks

Yunzhe Xue, Meiyan Xie, Usman Roshan, 2021 .

Structural and Evolutionary Considerations for Multiple Sequence Alignment of RNA , and the Challenges for Algorithms That Ignore Them

Joseph J. Gillespie, Usman Roshan, Usman Roshan, 2007 .

Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

Abdulrhman Aljouie, Usman Roshan, Nihir Patel, 2016 .

MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence

Turki Turki, Usman Roshan, Usman Roshan, 2014, BMC Genomics.