Junyi Li

发表

Long-read-based human genomic structural variation detection with cuteSV

Yadong Wang, Bo Liu, Yue Jiang, 2020, Genome Biology.

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index

Yadong Wang, Tianyi Zang, Bo Liu, 2019, Genome biology.

MEAHNE: MiRNA-disease association prediction based on semantic information in heterogeneous networks

Yadong Wang, Bo Liu, Yang Zhang, 2022, bioRxiv.

OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection

Yadong Wang, B. Liu, Yang Zhang, 2022, Comput. Biol. Chem..

rMETL: sensitive mobile element insertion detection with long read realignment

Yadong Wang, Tao Jiang, Junyi Li, 2018, bioRxiv.

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index

Bo Liu, Junyi Li, Yadong Wang, 2019, Genome Biology.

PmDNE: Prediction of miRNA-Disease Association Based on Network Embedding and Network Similarity Analysis

Bo Liu, Yadong Wang, Junyi Li, 2020, BioMed research international.

Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module

Yadong Wang, Bo Liu, Junyi Li, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Pan-Cancer Classification Based on Self-Normalizing Neural Networks and Feature Selection

Yadong Wang, Junyi Li, Tao Huang, 2020, Frontiers in Bioengineering and Biotechnology.

DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes

Yadong Wang, Yongtian Wang, Yang Bai, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network

Yang Liu, Junyi Li, Xuan Wang, 2023, Bioinformatics.

IIMLP: integrated information-entropy-based method for LncRNA prediction

Li Zhang, Huinian Li, Qingzhe Xu, 2021, BMC Bioinformatics.

Prediction of Human LncRNAs Based on Integrated Information Entropy Features

Yuan Ping, Wei Jiang, Li Zhang, 2019, ICIC.

PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations

Yadong Wang, Tao Jiang, Junyi Li, 2021, Frontiers in Genetics.

deGSM: memory scalable construction of large scale de Bruijn Graph

Bo Liu, Junyi Li, Yan Gao, 2018, bioRxiv.

Explainable t-SNE for single-cell RNA-seq data analysis

C. Li, Henry Han, Juan Wang, 2022, bioRxiv.

ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering

Wei Jiang, Bo Liu, Jing Liu, 2020, Comput. Biol. Chem..

ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding

Yulin Wu, Yadong Wang, Bo Liu, 2021, ICIC.

Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction

Yadong Wang, Bo Liu, Junyi Li, 2020, BMC Bioinform..

SmileGNN: Drug–Drug Interaction Prediction Based on the SMILES and Graph Neural Network

Xutao Li, Xueting Han, Junyi Li, 2021, Life.

Fast and Accurate Classification of Meta-Genomics Long Reads With deSAMBA

Yadong Wang, Yang Hu, Bo Liu, 2021, Frontiers in Cell and Developmental Biology.

Integrated entropy-based approach for analyzing exons and introns in DNA sequences

Yadong Wang, Renjie Tan, Bo Liu, 2019, BMC Bioinformatics.

Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network

Hong Li, Bo Liu, Ying Liu, 2020, Comput. Biol. Chem..

PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction

B. Liu, Yadong Wang, Junyi Li, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

SmileGNN: Drug–Drug Interaction Prediction Based on the SMILES and Graph Neural Network

Xutao Li, Junyi Li, Ruixia Xie, 2022, Life.

ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning

Yadong Wang, B. Liu, Linlin Du, 2023, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Prediction of the disease causal genes based on heterogeneous network and multi-feature combination method

Yadong Wang, Junyi Li, Sen Li, 2022, Comput. Biol. Chem..

MDGNN: Microbial Drug Prediction Based on Heterogeneous Multi-Attention Graph Neural Network

Yang Zhang, Junyi Li, Jiangsheng Pi, 2022, Frontiers in Microbiology.

Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information

Bo Liu, Junyi Li, Peishun Jiao, 2023, Bioinformatics.

HNetGO: protein function prediction via heterogeneous network transformer

Bo Liu, Junyi Li, Shizheng Qiu, 2023, Briefings in bioinformatics.

Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions

Yadong Wang, Bo Liu, Junyi Li, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

MEAHNE: miRNA–Disease Association Prediction Based on Semantic Information in a Heterogeneous Network

Yadong Wang, Bo Liu, Yang Zhang, 2022, Life.