Samuel M. D. Oliveira

发表

iCellFusion: Tool for Fusion and Analysis of Live-Cell Images from Time-Lapse Multimodal Microscopy

Antti Häkkinen, Andre S. Ribeiro, Abhishekh Gupta, 2016 .

Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements

Antti Häkkinen, Andre S. Ribeiro, Huy Tran, 2016, PLoS Comput. Biol..

Estimating Effects of Extrinsic Noise on Model Genes and Circuits with Empirically Validated Kinetics

Andre S. Ribeiro, Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, 2017, WIVACE.

Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli

Andre S. Ribeiro, Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, 2018, CMSB.

SCIP: a single-cell image processor toolbox

Antti Häkkinen, Andre S. Ribeiro, Leonardo Martins, 2018, Bioinform..

In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter

Olli Yli-Harja, Meenakshisundaram Kandhavelu, Andre S. Ribeiro, 2013, Nucleic acids research.

Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry.

Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, A. Ribeiro, 2019, Journal of microbiological methods.

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, M. Nykter, 2022, bioRxiv.

Kinetics of the cellular intake of a gene expression inducer at high concentrations.

Samuel M. D. Oliveira, A. Ribeiro, S. M. D. Oliveira, 2015, Molecular bioSystems.

Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli

Samuel M. D. Oliveira, A. Ribeiro, S. M. D. Oliveira, 2016, Molecular microbiology.

Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures

Samuel M. D. Oliveira, A. Ribeiro, Vinodh Kandavalli, 2019, Scientific Reports.

Dissecting the stochastic transcription initiation process in live Escherichia coli

Samuel M. D. Oliveira, Jerome G. Chandraseelan, A. Ribeiro, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid.

Samuel M. D. Oliveira, Jerome G. Chandraseelan, O. Yli-Harja, 2015, Molecular bioSystems.

Robustness of the division symmetry in Escherichia coli and functional consequences of symmetry breaking

Olli Yli-Harja, Abhishekh Gupta, Jason Lloyd-Price, 2014, Physical biology.

In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli.

Abhishekh Gupta, Jason Lloyd-Price, Samuel M. D. Oliveira, 2014, Biophysical journal.

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

Samuel M. D. Oliveira, A. Ribeiro, S. M. D. Oliveira, 2019, bioRxiv.

Effects of temperature on the dynamics of the LacI-TetR-CI repressilator.

Antti Häkkinen, Meenakshisundaram Kandhavelu, Samuel M. D. Oliveira, 2013, Molecular bioSystems.

Genetic circuit design automation with Cello 2.0

Christopher A. Voigt, Samuel M. D. Oliveira, Timothy S. Jones, 2022, Nature Protocols.

The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures

Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, A. Ribeiro, 2018, Physical biology.

Synchrony between Genetic Repressilators in Sister Cells in Different Temperatures

Samuel M. D. Oliveira, Jerome G. Chandraseelan, A. Ribeiro, 2015 .

A library of reporters of the global regulators of gene expression of Escherichia coli

Samuel M. D. Oliveira, Vinodh Kandavalli, Vatsala Chauhan, 2023, bioRxiv.

Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures

Samuel M. D. Oliveira, A. Ribeiro, Vinodh Kandavalli, 2019, Scientific Reports.

Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli

Mohamed N. M. Bahrudeen, Samuel M. D. Oliveira, A. Ribeiro, 2018, Physical biology.

BIOTECHNO 2016

Samuel M. D. Oliveira, D. Malerba, A. Świerniak, 2016 .