Jacob J Kennedy

发表

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

Pei Wang, Susan E Abbatiello, Henry Rodriguez, 2013, Nature Methods.

Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry

Jeffrey R. Whiteaker, Regine M. Schoenherr, Uliana J. Voytovich, 2012, Proteomics.

Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues.

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2016, Journal of proteome research.

Internal Standard Triggered-Parallel Reaction Monitoring Mass Spectrometry Enables Multiplexed Quantification of Candidate Biomarkers in Plasma

Jeffrey R. Whiteaker, Lisa A. Jones, Jacob J. Kennedy, 2022, Analytical chemistry.

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

Jeffrey R. Whiteaker, Matthew A. Wyczalkowski, Ratna R. Thangudu, 2020, Cell.

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

Jeffrey R. Whiteaker, Ben C. Collins, Jacob J. Kennedy, 2015, Nature Methods.

Plasma Proteome Profiles Associated with Inflammation, Angiogenesis, and Cancer

Jacob Kennedy, Hong Wang, Christopher J. Kemp, 2011, PloS one.

Preserving the Phosphoproteome of Clinical Biopsies Using a Quick-Freeze Collection Device.

Jeffrey R. Whiteaker, Jacob J. Kennedy, A. Paulovich, 2022, Biopreservation and biobanking.

Tumor microenvironment-derived proteins dominate the plasma proteome response during breast cancer induction and progression.

Jacob J. Kennedy, S. Hanash, P. Nelson, 2011, Cancer research.

Comparative analysis of TCR and CAR signaling informs CAR designs with superior antigen sensitivity and in vivo function

Jeffrey R. Whiteaker, Jacob J. Kennedy, A. Paulovich, 2021, Science Signaling.

Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function

Jeffrey R. Whiteaker, Uliana J. Voytovich, Jacob J. Kennedy, 2018, Science Signaling.

Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer

Jeffrey R. Whiteaker, Sara R. Savage, Uliana J. Voytovich, 2021, Cell reports. Medicine.

Immobilized Metal Affinity Chromatography Coupled to Multiple Reaction Monitoring Enables Reproducible Quantification of Phospho-signaling*

Jeffrey R. Whiteaker, Uliana J. Voytovich, Jacob J. Kennedy, 2015, Molecular & Cellular Proteomics.

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

Guo Ci Teo, Allison P. Heath, Marilyn M. Li, 2020, Cell.

Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2021, Frontiers in Immunology.

Identification of a Blood-Based Protein Biomarker Panel for Lung Cancer Detection

Jeffrey R. Whiteaker, Jacob J. Kennedy, A. Paulovich, 2020, Cancers.

Commercially available antibodies can be applied in quantitative multiplexed peptide immunoaffinity enrichment targeted mass spectrometry assays

Jeffrey R. Whiteaker, Regine M. Schoenherr, Uliana J. Voytovich, 2016, Proteomics.

DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae

Jacob J. Kennedy, A. Paulovich, B. Piening, 2016, Genetics.

Application of serum proteomics to the Women's Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings

Jacob J. Kennedy, J. Manson, S. Hanash, 2009, Genome Medicine.

Targeted Mass Spectrometry Enables Quantification of Novel Pharmacodynamic Biomarkers of ATM Kinase Inhibition

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2021, Cancers.

Targeted mass-spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP kinase, and AKT signaling

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2021, Cell reports methods.

CPTAC Assay Portal: a repository of targeted proteomic assays

Brendan MacLean, Jacob Kennedy, Lisa J Zimmerman, 2014, Nature Methods.

A targeted proteomics–based pipeline for verification of biomarkers in plasma

Pei Wang, Jacob Kennedy, Jeffrey R. Whiteaker, 2011, Nature Biotechnology.

The development of an integrated platform to identify breast cancer glycoproteome changes in human serum.

Jacob J. Kennedy, S. Hanash, W. Hancock, 2010, Journal of chromatography. A.

Multiplexed triage of candidate biomarkers in plasma using internal standard triggered-parallel reaction monitoring mass spectrometry

Jeffrey R. Whiteaker, Lisa A. Jones, A. Paulovich, 2021, bioRxiv.

Peptide Immunoaffinity Enrichment with Targeted Mass Spectrometry: Application to Quantification of ATM Kinase Phospho-Signaling.

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2017, Methods in molecular biology.

A multiplexed assay for quantifying immunomodulatory proteins supports correlative studies in immunotherapy clinical trials

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2023, Frontiers in Oncology.

Quantification of Human Epidermal Growth Factor Receptor 2 by Immunopeptide Enrichment and Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded and Frozen Breast Cancer Tissues.

Jeffrey R. Whiteaker, Regine M. Schoenherr, Jacob J. Kennedy, 2021, Clinical chemistry.

Detection of elevated plasma levels of epidermal growth factor receptor before breast cancer diagnosis among hormone therapy users.

Jacob Kennedy, Yuzheng Zhang, Sharon J Pitteri, 2010, Cancer research.

Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.

Michael J MacCoss, Jing Chen, Brendan MacLean, 2016, Methods in molecular biology.