James A. Thomson

发表

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

Yuan Li, Colin N. Dewey, Ning Leng, 2015, Bioinform..

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization

James A. Thomson, Christina Kendziorski, Rhonda Bacher, 2020, bioRxiv.

High-Resolution AUV Surveys of the Eastern Sigsbee Escarpment

Philippe Jeanjean, James A. Thomson, Andrew W. Hill, 2002 .

SKiM - A generalized literature-based discovery system for uncovering novel biomedical knowledge from PubMed

Finn Kuusisto, James A. Thomson, Ron Stewart, 2020 .

KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications

David L. Page, Finn Kuusisto, James A. Thomson, 2020, F1000Research.

MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers

Peng Jiang, H. Tom Soh, James A. Thomson, 2014, Bioinform..

After two tracks: Integrating START and INF

James A. Thomson, 1984 .

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Bret Duffin, James A. Thomson, Christina Kendziorski, 2020, PloS one.

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2013, Bioinform..

Assessment of Drug-Induced Toxicity Biomarkers in the Brain Microphysiological System (MPS) Using Targeted and Untargeted Molecular Profiling

Murat Cirit, James A. Thomson, Begum Alaybeyoglu, 2019, Front. Big Data.

SCnorm: A quantile-regression based approach for robust normalization of single-cell RNA-seq data

Ning Leng, James A. Thomson, Christina Kendziorski, 2016, bioRxiv.

OEFinder: A user interface to identify and visualize ordering effects in single-cell RNA-seq data

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2015 .

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2013, Bioinform..

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments

Ning Leng, James A. Thomson, Christina Kendziorski, 2018, BMC Bioinformatics.

Computational Drug Repositioning Using Continuous Self-Controlled Case Series

David Page, Peggy L. Peissig, James A. Thomson, 2016, KDD.

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks

James A. Thomson, Ron M. Stewart, Sushmita Roy, 2013, PLoS Comput. Biol..

TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

Hang Zhang, Fang Ruan, James A. Thomson, 2011, BMC Systems Biology.

Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2017 .

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches

Jignesh M. Patel, You Jung Kim, James A. Thomson, 2009, Bioinform..

RNA-Seq gene expression estimation with read mapping uncertainty

Colin N. Dewey, Bo Li, James A. Thomson, 2009, Bioinform..

Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data

David Page, Peggy L. Peissig, James A. Thomson, 2016, IJCAI.

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Bret Duffin, James A. Thomson, Christina Kendziorski, 2019, PloS one.

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

Colin N. Dewey, Chris Barry, Bianca Habermann, 2013, PLoS Comput. Biol..

Chromatin architecture reorganization during stem cell differentiation

Jing Liang, Zhen Ye, Huimin Zhao, 2015, Nature.

Quality control of single-cell RNA-seq by SinQC

Peng Jiang, James A. Thomson, Ron M. Stewart, 2016, Bioinform..

A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications

David Page, Finn Kuusisto, James A. Thomson, 2017, CRI.

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

Ning Leng, James A. Thomson, Ron M. Stewart, 2016, Bioinform..

Human cell culture volume 6: Human embryonic stem cells

Bernhard O. Palsson, James A. Thomson, John R. W. Masters, 2007 .

scDD: A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2016 .

SCPattern: A statistical approach to identify and classify expression changes in single cell RNA-seq experiments with ordered conditions

Ning Leng, James A. Thomson, Christina Kendziorski, 2016, bioRxiv.

In vitro differentiation of transplantable neural precursors from human embryonic stem cells

Marius Wernig, James A. Thomson, Ian D. Duncan, 2001, Nature Biotechnology.

Development of an Efficient Targeted Cell-SELEX Procedure for DNA Aptamer Reagents

Brian E. McIntosh, James A. Thomson, Ron Stewart, 2013, PloS one.

Human pluripotent stem cell-derived neural constructs for predicting neural toxicity

C. David Page, C. D. Page, James A. Thomson, 2015, Proceedings of the National Academy of Sciences.

Induced pluripotent stem cells from a spinal muscular atrophy patient

James A. Thomson, Clive N. Svendsen, C. Lorson, 2009, Nature.

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets

Sunduz Keles, Shulan Tian, James A. Thomson, 2008, Nucleic acids research.

Homologous recombination in human embryonic stem cells

James A. Thomson, J. Thomson, T. Zwaka, 2003, Nature Biotechnology.

A cost-effective RNA sequencing protocol for large-scale gene expression studies

James A. Thomson, Jennifer M. Bolin, Ron Stewart, 2015, Scientific Reports.

Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.

James A. Thomson, Li-Fang Chu, Ron Stewart, 2018, Developmental biology.

Hematopoietic colony-forming cells derived from human embryonic stem cells

James A. Thomson, Robert Auerbach, D. Kaufman, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Oscope identifies oscillatory genes in unsynchronized single cell RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2015, Nature Methods.

Human Vascular Tissue Models Formed from Human Induced Pluripotent Stem Cell Derived Endothelial Cells

Linda G. Griffith, Roger D. Kamm, James A. Thomson, 2014, Stem Cell Reviews and Reports.

Comprar Principles Of Regenerative Medicine | Robert Nerem | 9780123814227 | Academic Press

James A. Thomson, Robert Lanza, Robert M. Nerem, 2010 .