Ron M. Stewart

发表

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

Yuan Li, Colin N. Dewey, Ning Leng, 2015, Bioinform..

MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers

Peng Jiang, H. Tom Soh, James A. Thomson, 2014, Bioinform..

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2013, Bioinform..

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2013, Bioinform..

Computational Drug Repositioning Using Continuous Self-Controlled Case Series

David Page, Peggy L. Peissig, James A. Thomson, 2016, KDD.

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks

James A. Thomson, Ron M. Stewart, Sushmita Roy, 2013, PLoS Comput. Biol..

TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

Hang Zhang, Fang Ruan, James A. Thomson, 2011, BMC Systems Biology.

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches

Jignesh M. Patel, You Jung Kim, James A. Thomson, 2009, Bioinform..

RNA-Seq gene expression estimation with read mapping uncertainty

Colin N. Dewey, Bo Li, James A. Thomson, 2009, Bioinform..

Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data

David Page, Peggy L. Peissig, James A. Thomson, 2016, IJCAI.

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

Colin N. Dewey, Chris Barry, Bianca Habermann, 2013, PLoS Comput. Biol..

Quality control of single-cell RNA-seq by SinQC

Peng Jiang, James A. Thomson, Ron M. Stewart, 2016, Bioinform..

A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications

David Page, Finn Kuusisto, James A. Thomson, 2017, CRI.

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

Ning Leng, James A. Thomson, Ron M. Stewart, 2016, Bioinform..

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets

Ron M. Stewart, Christina Kendziorski, Matthew N. Bernstein, 2021, BMC Bioinform..

Oscope identifies oscillatory genes in unsynchronized single cell RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2015, Nature Methods.