Jenn-Kang Hwang

发表

Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC-Linux Systems with New Architectures, Updated Compilers, and Libraries

Chuan Yi Tang, Jen-Shiang K. Yu, Jenn-Kang Hwang, 2004, J. Chem. Inf. Model..

GEMSCORE: A New Empirical Energy Function for Protein Folding

Jinn-Moon Yang, Jenn-Kang Hwang, Yi-Yuan Chiu, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Computing motif correlations in proteins

Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, 2003, J. Comput. Chem..

Protein subcellular localization prediction based on compartment-specific features and structure conservation

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2007, BMC Bioinformatics.

pKNOT: the protein KNOT web server

Jenn-Kang Hwang, Yan-Long Lai, Shih-Chung Yen, 2007, Nucleic Acids Res..

Prediction of Protein Subcellular Localizations

Jenn-Kang Hwang, Chin-Sheng Yu, Jenn-Kang Hwang, 2008, 2008 Eighth International Conference on Intelligent Systems Design and Applications.

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2008, BMC Bioinformatics.

Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations

Jinn-Moon Yang, Jenn-Kang Hwang, Yi-Yuan Chiu, 2008, J. Comput. Chem..

The amino acid-coupling sequence patterns in thermophilic and mesophilic proteomes

Ming-Tat Ko, Jenn-Kang Hwang, Han-Kuen Liang, 2004, 7th International Symposium on Parallel Architectures, Algorithms and Networks, 2004. Proceedings..

(PS)2-v2: template-based protein structure prediction server

Chih-Chieh Chen, Jinn-Moon Yang, Jenn-Kang Hwang, 2009, BMC Bioinformatics.

MIB: Metal Ion-Binding Site Prediction and Docking Server

Yu-Feng Lin, Jenn-Kang Hwang, Chih-Wen Cheng, 2016, J. Chem. Inf. Model..

pKNOT v.2: the protein KNOT web server

Chih-Chieh Chen, Jenn-Kang Hwang, Yan-Long Lai, 2012, Nucleic Acids Res..

CPred: a web server for predicting viable circular permutations in proteins

Ping-Chiang Lyu, Jenn-Kang Hwang, Tian Dai, 2012, Nucleic Acids Res..

(PS)2: protein structure prediction server version 3.0

Chih-Chieh Chen, Jenn-Kang Hwang, Chih-Sheng Chu, 2015, Nucleic Acids Res..

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

Hsien-Da Huang, Tzong-Yi Lee, Ming-Tat Ko, 2007, Nucleic Acids Res..

On the packing density of the unbound protein-protein interaction interface and its implications in dynamics

Jenn-Kang Hwang, Tsun-Tsao Huang, Jau-Ji Lin, 2015, BMC Bioinformatics.

Fine‐grained protein fold assignment by support vector machines using generalized npeptide coding schemes and jury voting from multiple‐parameter sets

Chih-Jen Lin, Jung-Ying Wang, Jinn-Moon Yang, 2003, Proteins.

(PS)2: protein structure prediction server

Chih-Chieh Chen, Jinn-Moon Yang, Jenn-Kang Hwang, 2006, Nucleic Acids Res..

SBMOpenMM: A Builder of Structure-Based Models for OpenMM

Jordi Villà-Freixa, Jenn-Kang Hwang, Sílvia Osuna, 2021 .

Predicting disulfide connectivity patterns

Jenn-Kang Hwang, Chin-Sheng Yu, Jenn-Kang Hwang, 2007, Proteins.

GEM: A Gaussian evolutionary method for predicting protein side‐chain conformations

Cheng-Yan Kao, Ming-Jing Hwang, Chi-Hung Tsai, 2002, Protein science : a publication of the Protein Society.

On the relationship between the sequence conservation and the packing density profiles of the protein complexes

Chih-Min Chang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2013, Proteins.

Prediction of NMR order parameters in proteins using weighted protein contact-number model

Shao-Wei Huang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2008 .

How Important Are Quantum Mechanical Nuclear Motions in Enzyme Catalysis

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1996 .

On the relationship between catalytic residues and their protein contact number.

Shao-Wei Huang, Jenn-Kang Hwang, Sung-Huan Yu, 2011, Current protein & peptide science.

Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

Wei-Lun Hsu, Jenn-Kang Hwang, Jenn-Kang Hwang, 2007, Molecular biology and evolution.

Protein Thermal Stability Enhancement by Designing Salt Bridges: A Combined Computational and Experimental Study

Jenn-Kang Hwang, Ching-Ping Tseng, Chi-Wen Lee, 2014, PloS one.

A Quantized Classical Path Approach for Calculations of Quantum Mechanical Rate Constants

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1993 .

Deriving protein dynamical properties from weighted protein contact number

Shao-Wei Huang, Jenn-Kang Hwang, Yan-Long Lai, 2008, Proteins.

Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure.

Jenn-Kang Hwang, Julian Echave, Sung-Huan Yu, 2014, Molecular biology and evolution.

Simulations of quantum mechanical corrections for rate constants of hydride-transfer reactions in enzymes and solutions

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1991 .

Prediction of disulfide connectivity from protein sequences

Jenn-Kang Hwang, Jenn-Kang Hwang, Yu‐Ching Chen, 2005, Proteins.

Structure-stability-activity relationship in covalently cross-linked N-carbamoyl D-amino acid amidohydrolase and N-acylamino acid racemase.

Jenn-Kang Hwang, Wei-Chun Chiu, Jenn-Kang Hwang, 2006, Journal of molecular biology.

Amino acid coupling patterns in thermophilic proteins

Ming-Tat Ko, Jenn-Kang Hwang, Han-Kuen Liang, 2005, Proteins.

Molecular dynamics simulation of the enhancement of cobra cardiotoxin and E6 protein binding on mixed self-assembled monolayer molecules

Ching-Chang Chieng, Shih-Wei Hung, Jenn-Kang Hwang, 2006, Nanotechnology.

Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chuan Yi Tang, Tun-Wen Pai, Ping-Chiang Lyu, 2010, PloS one.

On the Structural Characteristics of the Protein Active Sites and Their Relation to Thermal Fluctuations

Shao-Wei Huang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2011 .

Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level

Jenn-Kang Hwang, Julian Echave, Sung-Huan Yu, 2014, BioMed research international.

Evolutionary information hidden in a single protein structure

Chih-Min Chang, Jenn-Kang Hwang, Wei-Cheng Lo, 2012, Proteins.

Using simplified protein representation as a reference potential for all-atom calculations of folding free energy

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1999 .

A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility

Jenn-Kang Hwang, Julian Echave, Tsun-Tsao Huang, 2014, BMC Evolutionary Biology.