Laura Bonati

发表

Predicting the accuracy of protein–ligand docking on homology models

Alessandro Pandini, Annalisa Bordogna, Laura Bonati, 2011, J. Comput. Chem..

BioPySDS: an Object-Oriented Interface to Manage Protein Dynamics in an Evolutionary Framework

Giancarlo Mauri, Alessandro Pandini, Laura Bonati, 2004 .

Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics

Alessandro Pandini, Laura Bonati, Stefano Motta, 2018, PLoS Comput. Biol..

Selezione di riferimenti bibliografici relativi alla formazione di PCDD e PCDF

Laura Bonati, Ugo Cosentino, Demetrio Pitea, 1987 .

Self Organizing Maps to efficiently cluster and functionally interpret protein conformational ensembles

Fabio Stella, Laura Bonati, Domenico Fraccalvieri, 2013, WIVACE.

Functional annotation of protein conformations by Self-Organizing Maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2012, ECCB 2012.

NUclear Receptor Activity (NURA) dataset

Davide Ballabio, Francesca Grisoni, Laura Bonati, 2020 .

NURA: A curated dataset of nuclear receptor modulators.

Davide Ballabio, Francesca Grisoni, Laura Bonati, 2020, Toxicology and applied pharmacology.

MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database

Alessandro Pandini, Franca Fraternali, Laura Bonati, 2007, Bioinform..

Additional file 3

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011 .

New Aryl Hydrocarbon Receptor Homology Model Targeted To Improve Docking Reliability

Annalisa Bordogna, Laura Bonati, Ilaria Motto, 2011, J. Chem. Inf. Model..

A new methodology for the comparison of protein dynamics based on self-organizing maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011 .

Additional file 6

Fabio Stella, Alessandro Pandini, Debra L. Fulton, 2009 .

Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation

Laura Bonati, Dario Corrada, Anatoly A. Soshilov, 2016, PLoS Comput. Biol..

Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011, BMC Bioinformatics.

Functional interpretation of protein conformational ensembles using self-organizing maps and network components

Fabio Stella, Alessandro Pandini, Laura Bonati, 2013 .

On the role of the molecular electrostatic potential in modelling the activity of non-peptide angiotensin II receptor antagonists

Anna Vulpetti, Carlo Scolastico, Gianpaolo Bravi, 1993 .

Ligand binding and activation of the Ah receptor.

Alessandro Pandini, Laura Bonati, A. Pandini, 2002, Chemico-biological interactions.

Modeling Binding with Large Conformational Changes: Key Points in Ensemble-Docking Approaches

Laura Bonati, Stefano Motta, L. Bonati, 2017, J. Chem. Inf. Model..

Artificial neural networks for efficient clustering of conformational ensembles and their potential for medicinal chemistry.

Alessandro Pandini, Laura Bonati, Domenico Fraccalvieri, 2013, Current topics in medicinal chemistry.

Evidence that ligand binding is a key determinant of Ah receptor-mediated transcriptional activity.

Laura Bonati, Jeffrey M Peters, J. Peters, 2005, Archives of biochemistry and biophysics.

3D QSAR The Integration of QSAR with Molecular Modeling

Roberto Todeschini, Gabriele Cruciani, Laura Bonati, 1994 .

Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis.

Alessandro Pandini, Jing Zhao, Laura Bonati, 2009, Biochemistry.

Molecular modeling of the AhR structure and interactions can shed light on ligand-dependent activation and transformation mechanisms.

Laura Bonati, Stefano Motta, Dario Corrada, 2017, Current opinion in toxicology.

Trends in Ecological Physical Chemistry.

Marina Lasagni, Laura Bonati, Demetrio Pitea, 1994 .

Modeling and prediction of molecular properties. Theory of grid-weighted holistic invariant molecular (G-WHIM) descriptors

Marina Lasagni, Roberto Todeschini, Laura Bonati, 1997 .

Molecular electrostatic potential of substituted aromatic compounds: Factors affecting the differences between Ab Initio and semiempirical results

Laura Bonati, Ugo Cosentino, Demetrio Pitea, 1992 .

Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis.

Alessandro Pandini, Laura Bonati, A. Pandini, 2007, Biochemistry.

Giancarlo Mauri, Alessandro Pandini, Annalisa Bordogna, 2007, Protein engineering, design & selection : PEDS.

Structural modeling of the AhR:ARNT complex in the bHLH-PASA-PASB region elucidates the key determinants of dimerization.

Laura Bonati, Dario Corrada, D. Corrada, 2017, Molecular bioSystems.

Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics.

Alessandro Pandini, Matteo Tiberti, Elena Papaleo, 2012, Molecular bioSystems.