Paul A. Jenkins

发表

KwARG: Parsimonious Reconstruction of Ancestral Recombination Graphs with Recurrent Mutation

Anastasia Ignatieva, Rune B. Lyngso, Paul A. Jenkins, 2020 .

The computational cost of blocking for sampling discretely observed diffusions

Gareth O. Roberts, Paul A. Jenkins, Murray Pollock, 2020 .

Simple conditions for convergence of sequential Monte Carlo genealogies with applications

Adam M. Johansen, Paul A. Jenkins, Jere Koskela, 2020 .

Computational Inference Beyond Kingman's Coalescent

Paul A. Jenkins, Jere Koskela, Dario Spanò, 2015, J. Appl. Probab..

A Likelihood-Free Inference Framework for Population Genetic Data using Exchangeable Neural Networks

Yun S. Song, Jeffrey Chan, Valerio Perrone, 2018, bioRxiv.

Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo

Paul A. Jenkins, Jere Koskela, Dario Spanò, 2016, Stat. Comput..

Poisson Random Fields for Dynamic Feature Models

Yee Whye Teh, Valerio Perrone, Paul A. Jenkins, 2016, J. Mach. Learn. Res..

Inference from Samples of DNA Sequences Using a Two-Locus Model

Robert C. Griffiths, Paul A. Jenkins, R. Griffiths, 2011, J. Comput. Biol..

Bayesian semi-parametric inference for diffusion processes using splines

Gareth O. Roberts, Paul A. Jenkins, Murray Pollock, 2021 .

Weak Convergence of Non-neutral Genealogies to Kingman's Coalescent

Adam M. Johansen, Paul A. Jenkins, Jere Koskela, 2021 .

KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation

Jotun Hein, Anastasia Ignatieva, Paul A. Jenkins, 2020, bioRxiv.

Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster

Andrew H. Chan, Paul A. Jenkins, Yun S. Song, 2012, PLoS genetics.

EXACT SIMULATION OF THE WRIGHT – FISHER DIFFUSION

Paul A. Jenkins, Dario Spanò, P. Jenkins, 2017 .

Exact simulation of the sample paths of a diffusion with a finite entrance boundary

Paul A. Jenkins, P. Jenkins, 2013, 1311.5777.

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection

Paul A. Jenkins, J. Hein, O. Pybus, 2015, Genetics.

Coalescent inference using serially sampled, high-throughput sequencing data from intra-host HIV infection

Paul A. Jenkins, J. Hein, O. Pybus, 2015, bioRxiv.

General Triallelic Frequency Spectrum Under Demographic Models with Variable Population Size

Paul A. Jenkins, Yun S. Song, Jonas Mueller, 2013, Genetics.

Computational Inference Beyond Kingman's Coalescent

Paul A. Jenkins, Jere Koskela, Dario Spanò, 2013, J. Appl. Probab..

The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele.

Paul A. Jenkins, Yun S. Song, Yun S Song, 2011, Theoretical population biology.

Closed-Form Two-Locus Sampling Distributions: Accuracy and Universality

Paul A. Jenkins, Yun S. Song, P. Jenkins, 2009, Genetics.

Convergence of likelihood ratios and estimators for selection in nonneutral Wright–Fisher diffusions

Paul A. Jenkins, Dario Spanò, Jere Koskela, 2020, Scandinavian Journal of Statistics.

Asymptotic genealogies of interacting particle systems with an application to sequential Monte Carlo

Adam M. Johansen, Paul A. Jenkins, Jere Koskela, 2018, 1804.01811.

Simulating bridges using confluent diffusions.

Paul A. Jenkins, G. Roberts, M. Sørensen, 2019, 1903.10184.

Bayesian non-parametric inference for $\Lambda$-coalescents: Posterior consistency and a parametric method

Paul A. Jenkins, Dario Spanò, Jere Koskela, 2015, Bernoulli.

Stopping-Time Resampling and Population Genetic Inference under Coalescent Models

Paul A. Jenkins, Paul A Jenkins, 2012, Statistical applications in genetics and molecular biology.

Consistency of Bayesian nonparametric inference for discretely observed jump diffusions

Paul A. Jenkins, Dario Spanò, Jere Koskela, 2015, Bernoulli.

TRACTABLE DIFFUSION AND COALESCENT PROCESSES FOR WEAKLY CORRELATED LOCI.

Paul A. Jenkins, Yun S. Song, P. Fearnhead, 2014, Electronic journal of probability.

TRACTABLE STOCHASTIC MODELS OF EVOLUTION FOR LOOSELY LINKED LOCI

Paul A. Jenkins, Yun S. Song, P. Fearnhead, 2014 .

Genealogy-Based Methods for Inference of Historical Recombination and Gene Flow and Their Application in Saccharomyces cerevisiae

Paul A. Jenkins, Yun S. Song, R. Brem, 2012, PloS one.

Sub-Doppler mid-infrared spectroscopy of molecular ions

Paul A. Jenkins, B. McCall, K. Crabtree, 2012 .