J. Andrew Royle

发表

Occupancy in Community-Level Studies

Kenneth H. Pollock, Darryl I. MacKenzie, James D. Nichols, 2017 .

Estimating landscape resistance to dispersal

J. Andrew Royle, Tabitha Graves, Richard B. Chandler, 2014, Landscape Ecology.

Movement-assisted localization from acoustic telemetry data

J. Andrew Royle, Nathan J. Hostetter, 2020, Movement ecology.

Spatial Capture-recapture with Partial Identity

J. Andrew Royle, 2015, 1503.06873.

Likelihood analysis of species occurrence probability from presence‐only data for modelling species distributions

J. Andrew Royle, James D. Nichols, Richard B. Chandler, 2012, Methods in Ecology and Evolution.

Chapter 5 – Beyond Two Occupancy States

Darryl I. MacKenzie, J. Andrew Royle, James D. Nichols, 2017 .

Integrating Resource Selection with Spatial Capture-Recapture Models

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Likelihood Analysis of Spatial Capture-Recapture Models

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Modeling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

J. Andrew Royle, 2018, bioRxiv.

Model Selection and Assessment

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Mixed Effects Models and Extensions in Ecology with R

J. Andrew Royle, Aaron M. Christ, 2009 .

Community distance sampling models allowing for imperfect detection and temporary emigration

J. Andrew Royle, Yuichi Yamaura, Y. Yamaura, 2017 .

Fundamental Principals of Statistical Inference

Kenneth H. Pollock, Darryl I. MacKenzie, James D. Nichols, 2017 .

Modelling non‐Euclidean movement and landscape connectivity in highly structured ecological networks

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2015 .

Dynamic design of ecological monitoring networks for non‐Gaussian spatio‐temporal data

J. Andrew Royle, Christopher K. Wikle, C. Wikle, 2005 .

Chapter 18 – Unmarked Populations

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Fully Spatial Capture-Recapture Models

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Optimal sampling design for spatial capture-recapture

J. Andrew Royle, Chris Sutherland, Gates Dupont, 2020, bioRxiv.

Spatial capture‐recapture models for search‐encounter data

J. Andrew Royle, Marc Kéry, Jérôme Guélat, 2011 .

Rachel S. McCrea and Byron J. T. Morgan, Analysis of Capture–Recapture Data

J. Andrew Royle, 2015 .

Appendix – I—Useful Software and R Packages

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Consequences of ignoring group association in spatial capture–recapture analysis

J. Andrew Royle, Pierre Dupont, Cyril Milleret, 2020, Wildlife Biology.

Efficient statistical mapping of avian count data

J. Andrew Royle, Christopher K. Wikle, C. Wikle, 2005, Environmental and Ecological Statistics.

2 – ESSENTIALS OF STATISTICAL INFERENCE

J. Andrew Royle, Robert M. Dorazio, 2009 .

Designing occupancy studies: general advice and allocating survey effort

Darryl I. MacKenzie, J. Andrew Royle, D. MacKenzie, 2005 .

Chapter 10 – Sampling Design

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

A hierarchical model for estimating density in camera‐trap studies

J. Andrew Royle, James D. Nichols, K. Ullas Karanth, 2009 .

oSCR: a spatial capture–recapture R package for inference about spatial ecological processes

J. Andrew Royle, Chris Sutherland, Daniel W. Linden, 2019, Ecography.

Spatial Capture-Recapture for Categorically Marked Populations with An Application to Genetic Capture-Recapture

J. Andrew Royle, Richard B. Chandler, Ben C. Augustine, 2018, bioRxiv.

Dealing with incomplete and variable detectability in multi-year, multi-site monitoring of ecological populations

J. Andrew Royle, Sarah J. Converse, S. Converse, 2012 .

Presence‐only modelling using MAXENT: when can we trust the inferences?

J. Andrew Royle, James D. Nichols, Richard B. Chandler, 2013 .

Spatial Capture-Recapture

J. Andrew Royle, Richard B. Chandler, Rahel Sollmann, 2013 .

Examining the occupancy-density relationship for a low density carnivore

J. Andrew Royle, Angela K. Fuller, Daniel W. Linden, 2016, bioRxiv.

Reply to Efford on ‘Integrating resource selection information with spatial capture–recapture’

J. Andrew Royle, Richard B. Chandler, Angela K. Fuller, 2014 .

5 – INFERENCE IN CLOSED POPULATIONS

J. Andrew Royle, Robert M. Dorazio, 2009 .

Program SPACECAP: software for estimating animal density using spatially explicit capture–recapture models

J. Andrew Royle, Pallavi Singh, James E. Hines, 2012 .

A multistate dynamic site occupancy model for spatially aggregated sessile communities

J. Andrew Royle, Keiichi Fukaya, Takashi Noda, 2016 .

Dynamic Optimization of Landscape Connectivity Embedding Spatial-Capture-Recapture Information

J. Andrew Royle, XiaoJian Wu, Bistra N. Dilkina, 2017, AAAI.

Space: Time Dynamic Design of Environmental Monitoring Networks

J. Andrew Royle, Christopher K. Wikle, C. Wikle, 1999 .

Hierarchical models of animal abundance and occurrence

J. Andrew Royle, Robert M. Dorazio, R. Dorazio, 2006 .

Developing Markov Chain Monte Carlo Samplers

J. Andrew Royle, Rahel Sollmann, Richard B. Chandler, 2014 .

Inference for finite-sample trajectories in dynamic multi-state site-occupancy models using hidden Markov model smoothing

J. Andrew Royle, Kevin Gross, Ian J. Fiske, 2013, Environmental and Ecological Statistics.

Likelihood analysis of spatial capture-recapture models for stratified or class structured populations

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2015 .

Multivariate Spatial Models

J. Andrew Royle, 2000 .

A Framework for Inference About Carnivore Density From Unstructured Spatial Sampling of Scat Using Detector Dogs

J. Andrew Royle, Craig M. Thompson, James D. Garner, 2012 .

Examining the occupancy–density relationship for a low‐density carnivore

J. Andrew Royle, Angela K. Fuller, Daniel W. Linden, 2017 .

Introduction to Data Simulation

J. Andrew Royle, Marc Kéry, 2015 .

Hierarchical spatial capture–recapture models: modelling population density in stratified populations

J. Andrew Royle, Sarah J. Converse, S. Converse, 2014 .

Multi-state Occupancy Models

J. Andrew Royle, Marc Kéry, 2021 .

Model‐based estimators of density and connectivity to inform conservation of spatially structured populations

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2017 .

Parameter-expanded data augmentation for Bayesian analysis of capture–recapture models

J. Andrew Royle, Robert M. Dorazio, R. Dorazio, 2010, Journal of Ornithology.

Movement-assisted localization from acoustic telemetry data

J. Andrew Royle, Nathan J. Hostetter, N. J. Hostetter, 2019, bioRxiv.

Integrating resource selection information with spatial capture–recapture

J. Andrew Royle, Richard B. Chandler, R. Chandler, 2012, Methods in Ecology and Evolution.

Dynamic N-mixture models with temporal variability in detection probability

J. Andrew Royle, Qing Zhao, Qing Zhao, 2019, Ecological Modelling.

Integrated Models for Multiple Types of Data

J. Andrew Royle, Marc Kéry, 2021 .

Spatial Capture-Recapture with Partial Identity: An Application to Camera Traps

J. Andrew Royle, Ben C. Augustine, Kevin R. Crooks, 2016, bioRxiv.

Hierarchical Modeling and Inference in Ecology: The Analysis of Data from Populations, Metapopulations and Communities

J. Andrew Royle, Robert M. Dorazio, R. Dorazio, 2008 .

Scaling-up camera traps: monitoring the planet's biodiversity with networks of remote sensors

J. Andrew Royle, J. Ahumada, Robin Steenweg, 2017 .

ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE

J. Andrew Royle, J. Nichols, D. MacKenzie, 2002, Ecology.

Multiresolution models for nonstationary spatial covariance functions

J. Andrew Royle, D. Nychka, C. Wikle, 2002 .

Bayesian Methods in the Atmospheric Sciences

J. Andrew Royle, L. M. Berliner, C. Wikle, 2007 .

N‐Mixture Models for Estimating Population Size from Spatially Replicated Counts

J. Andrew Royle, 2004, Biometrics.

A hierarchical approach to multivariate spatial modeling and prediction

J. Andrew Royle, L. Mark Berliner, L. M. Berliner, 1999 .

Estimating abundance of mountain lions from unstructured spatial sampling

J. Andrew Royle, Victoria L. Edwards, K. McKelvey, 2012 .

Site‐Occupancy Distribution Modeling to Correct Population‐Trend Estimates Derived from Opportunistic Observations

J. Andrew Royle, M. Kéry, M. Schaub, 2010, Conservation biology : the journal of the Society for Conservation Biology.

Evaluation of the Status of Anurans on a Refuge in Suburban Maryland

J. Andrew Royle, S. Brander, M. Eames, 2007 .

Estimating species richness and accumulation by modeling species occurrence and detectability.

J. Andrew Royle, R. Dorazio, B. Söderström, 2006, Ecology.

A Bayesian state-space formulation of dynamic occupancy models.

J. Andrew Royle, M. Kéry, 2007, Ecology.

HIERARCHICAL SPATIAL MODELS OF ABUNDANCE AND OCCURRENCE FROM IMPERFECT SURVEY DATA

J. Andrew Royle, M. Kéry, Hans Schmid, 2007 .

Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys

J. Andrew Royle, M. Kéry, 2008 .

Hierarchical Spatiotemporal Matrix Models for Characterizing Invasions

J. Andrew Royle, M. Hooten, C. Wikle, 2007, Biometrics.

ESTIMATING ABUNDANCE FROM REPEATED PRESENCE–ABSENCE DATA OR POINT COUNTS

J. Andrew Royle, J. Nichols, 2003 .

Occupancy estimation and modeling for rare and elusive populations

J. Andrew Royle, J. Nichols, D. MacKenzie, 2004 .

Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species

J. Andrew Royle, R. Dorazio, 2005 .

ESTIMATING SITE OCCUPANCY AND ABUNDANCE USING INDIRECT DETECTION INDICES

J. Andrew Royle, T. Stanley, 2005 .

Inference about density and temporary emigration in unmarked populations.

J. Andrew Royle, D. King, R. Chandler, 2011, Ecology.

Spatially explicit models for inference about density in unmarked or partially marked populations

J. Andrew Royle, R. Chandler, 2011, 1112.3250.

Mixture Models for Estimating the Size of a Closed Population When Capture Rates Vary among Individuals

J. Andrew Royle, R. Dorazio, 2003, Biometrics.

Species richness and occupancy estimation in communities subject to temporary emigration.

J. Andrew Royle, M. Kéry, R. Dorazio, 2009, Ecology.

Modeling spatially and temporally complex range dynamics when detection is imperfect

J. Andrew Royle, K. Pardieck, David J Ziolkowski, 2019, Scientific Reports.

MODELING AVIAN ABUNDANCE FROM REPLICATED COUNTS USING BINOMIAL MIXTURE MODELS

J. Andrew Royle, M. Kéry, Hans Schmid, 2005 .

Trend estimation in populations with imperfect detection

J. Andrew Royle, M. Kéry, R. Dorazio, 2009 .

Chapter 7 – Modeling Heterogeneous Detection Probabilities

J. Andrew Royle, J. Nichols, K. Pollock, 2017 .

Modeling Anuran Detection and Site Occupancy on North American Amphibian Monitoring Program (NAAMP) Routes in Maryland

J. Andrew Royle, Linda A. Weir, R. E. Jung, 2009 .

Modelling community dynamics based on species‐level abundance models from detection/nondetection data

J. Andrew Royle, Y. Yamaura, K. Kuboi, 2011 .

Multi-species occurrence models to evaluate the effects of conservation and management actions

J. Andrew Royle, Scott T. Bates, E. Zipkin, 2010 .

Estimating true instead of apparent survival using spatial Cormack–Jolly–Seber models

J. Andrew Royle, M. Schaub, 2014 .

Modelling occurrence and abundance of species when detection is imperfect

J. Andrew Royle, J. Nichols, M. Kéry, 2005 .

Density Estimation in a Wolverine Population using Spatial Capture-Recapture Models

J. Andrew Royle, Beth Gardner, B. Gardner, 2011 .

Spatially-explicit models for inference about density in unmarked populations

J. Andrew Royle, Richard B. Chandler, R. Chandler, 2011 .

Hierarchical Spatial Capture–Recapture Models for Estimating Density from Trapping Arrays

J. Andrew Royle, 2011 .

Accounting for meteorological effects in measuring urban ozone levels and trends

J. Andrew Royle, Laura J. Steinberg, Peter Bloomfield, 1996 .

Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring

J. Andrew Royle, O. Gimenez, P. Dupont, 2020, Proceedings of the National Academy of Sciences.

Genetic tagging in the Anthropocene: scaling ecology from alleles to ecosystems.

J. Andrew Royle, A. Ford, M. Proctor, 2019, Ecological applications : a publication of the Ecological Society of America.

Unifying population and landscape ecology with spatial capture–recapture

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2018 .

Unifying Population and Landscape Ecology with Spatial Capture-recapture

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2017, bioRxiv.

Estimating Population Size for Capercaillie (Tetrao urogallus L.) with Spatial Capture-Recapture Models Based on Genotypes from One Field Sample

J. Andrew Royle, M. Kéry, B. Gardner, 2015, PloS one.

Hierarchical models and bayesian analysis of bird survey information

J. Andrew Royle, W. Link, J. Sauer, 2005 .

Random effects and shrinkage estimation in capture-recapture models

J. Andrew Royle, William A. Link, W. Link, 2002 .

Hierarchical modeling of an invasive spread: case of the Eurasian collared-dove Streptopelia decaocto in the USA

J. Andrew Royle, Florent Bled, Emmanuelle Cam, 2010 .

Estimating Black Bear Density Using DNA Data From Hair Snares

J. Andrew Royle, Paul D. Curtis, Beth Gardner, 2010 .

Management decision making for fisher populations informed by occupancy modeling

J. Andrew Royle, Angela K. Fuller, Daniel W. Linden, 2016 .

Distribution, Abundance, and Species Richness in Ecology

J. Andrew Royle, Marc Kéry, M. Kéry, 2015 .

VEMAP Phase 2 Bioclimatic Database. I. Gridded Historical (20th century) Climate for Modeling Ecosystem Dynamics Across the Conterminous USA

Peter E. Thornton, J. Andrew Royle, Dominique Bachelet, 2004 .

A Hierarchical Spatial Model for Constructing Wind Fields from Scatterometer Data in the Labrador Sea

J. Andrew Royle, Christopher K. Wikle, Ralph F. Milliff, 1999 .

An algorithm for the construction of spatial coverage designs with implementation in SPLUS

J. Andrew Royle, Doug Nychka, D. Nychka, 1998 .

Inference About Species Richness and Community Structure Using Species-Specific Occupancy Models in the National Swiss Breeding Bird Survey MHB

J. Andrew Royle, Marc Kéry, M. Kéry, 2009 .

Using partial aggregation in spatial capture recapture

J. Andrew Royle, Cyril Milleret, Henrik Brøseth, 2018, Methods in Ecology and Evolution.

Density, distribution, and genetic structure of grizzly bears in the Cabinet‐Yaak Ecosystem

J. Andrew Royle, Katherine C. Kendall, Tabitha A. Graves, 2016 .

Population Influences on Tornado Reports in the United States

J. Andrew Royle, Christopher K. Wikle, C. Wikle, 2007 .

A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts

J. Andrew Royle, Colleen M. Handel, Courtney L. Amundson, 2014 .

Spatial capture–recapture for categorically marked populations with an application to genetic capture–recapture

J. Andrew Royle, Richard B. Chandler, Ben C. Augustine, 2019, Ecosphere.

Distribution patterns of wintering sea ducks in relation to the North Atlantic Oscillation and local environmental characteristics

J. Andrew Royle, Emily D. Silverman, Elise F. Zipkin, 2010, Oecologia.

Impacts of forest fragmentation on species richness: a hierarchical approach to community modelling

J. Andrew Royle, Elise F. Zipkin, E. Zipkin, 2009 .

Trends in anuran occupancy from northeastern states of the North American Monitoring Program

J. Andrew Royle, Ian J. Fiske, Linda A. Weir, 2009 .

Bayesian analysis of multi-state data with individual covariates for estimating genetic effects on demography

J. Andrew Royle, Sarah J. Converse, Richard P. Urbanek, 2011, Journal of Ornithology.

Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

J. Andrew Royle, 2018, Methods in Ecology and Evolution.

Analysis of Multinomial Models With Unknown Index Using Data Augmentation

J. Andrew Royle, William A. Link, Robert M. Dorazio, 2007, Journal of Computational and Graphical Statistics.

A Double-Observer Method to Estimate Detection Rate During Aerial Waterfowl Surveys

J. Andrew Royle, M. Otto, M. Koneff, 2008, The Journal of Wildlife Management.

Using multiple data sources provides density estimates for endangered Florida panther

J. Andrew Royle, Richard B. Chandler, Rahel Sollmann, 2013 .

A hierarchical nest survival model integrating incomplete temporally varying covariates

J. Andrew Royle, P. Adler, S. Converse, 2013, Ecology and evolution.

Rejoinder to "The Performance of Mixture Models in Heterogeneous Closed Population Capture‐Recapture"

J. Andrew Royle, Robert M. Dorazio, R. Dorazio, 2005 .

Trap Configuration and Spacing Influences Parameter Estimates in Spatial Capture-Recapture Models

J. Andrew Royle, Angela K. Fuller, Catherine C. Sun, 2014, PloS one.

Data Augmentation for Hierarchical Capture-recapture Models

J. Andrew Royle, William A. Link, Sarah J. Converse, 2012, 1211.5706.

A hierarchical model for spatial capture-recapture data: comment.

J Andrew Royle, J. Andrew Royle, Len Thomas, 2011, Ecology.

Spatial proximity moderates genotype uncertainty in genetic tagging studies

J. Andrew Royle, Angela K. Fuller, Ben C. Augustine, 2020, Proceedings of the National Academy of Sciences.

Incorporating citizen science data in spatially explicit integrated population models.

J. Andrew Royle, Angela K. Fuller, Catherine C. Sun, 2019, Ecology.

Explaining Local-Scale Species Distributions: Relative Contributions of Spatial Autocorrelation and Landscape Heterogeneity for an Avian Assemblage

J. Andrew Royle, Elise F. Zipkin, J. Sauer, 2013, PloS one.

Looking for a needle in a haystack: inference about individual fitness components in a heterogeneous population

J. Andrew Royle, J. Nichols, W. Link, 2013 .

Bayesian Methods in the Atmospheric

J. Andrew Royle, L. M. Berliner, C. Wikle, 1998 .

A GENERAL CLASS OF MULTINOMIAL MIXTURE MODELS FOR ANURAN CALLING SURVEY DATA

J. Andrew Royle, William A. Link, W. Link, 2005 .

Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS

J. Andrew Royle, Marc Kéry, M. Kéry, 2015 .

Biodiversity of man-made open habitats in an underused country: a class of multispecies abundance models for count data

J. Andrew Royle, Naoaki Shimada, Yuichi Yamaura, 2012, Biodiversity and Conservation.

Modeling Abundance Index Data from Anuran Calling Surveys

J. Andrew Royle, 2004 .

Statistical mapping of count survey data

J. Andrew Royle, William A. Link, John R. Sauer, 2002 .

Spatial capture–recapture models allowing Markovian transience or dispersal

J. Andrew Royle, Chris Sutherland, Angela K. Fuller, 2015, Population Ecology.

Balancing Precision and Risk: Should Multiple Detection Methods Be Analyzed Separately in N-Mixture Models?

J. Andrew Royle, Paul Beier, Katherine C. Kendall, 2012, PloS one.

Living on the edge: Opportunities for Amur tiger recovery in China

J. Andrew Royle, Tianming Wang, James L. D. Smith, 2018 .

Running head : Model-based approaches to detectability Model-based approaches to deal with detectability : a comment on Hutto

J Andrew Royle, Darryl I. MacKenzie, J. Andrew Royle, 2017 .

MODELING ABUNDANCE EFFECTS IN DISTANCE SAMPLING

J. Andrew Royle, Scott T. Bates, D. Dawson, 2004 .

Modeling Static Occurrence and Species Distributions Using Site-occupancy Models

J. Andrew Royle, Marc Kéry, 2015 .

Spatial proximity moderates genotype uncertainty in genetic tagging studies

J. Andrew Royle, Angela K. Fuller, Ben C. Augustine, 2020, Proceedings of the National Academy of Sciences.

Random eþ ects and shrinkage estimation in capture-recapture models

J. Andrew Royle, W. Link, 2002 .

An integrated population model for bird monitoring in North America.

J. Andrew Royle, J. Sauer, F. Ahrestani, 2017, Ecological applications : a publication of the Ecological Society of America.

Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches

J. Andrew Royle, E. Zipkin, E. Grant, 2014, Ecology and evolution.

Eco-evolutionary rescue promotes host-pathogen coexistence.

J. Andrew Royle, Graziella V. DiRenzo, Elise F. Zipkin, 2018, Ecological applications : a publication of the Ecological Society of America.

Spatial capture–recapture with random thinning for unidentified encounters

J. Andrew Royle, Ben C. Augustine, D. Linden, 2020, Ecology and evolution.

Using bear rub data and spatial capture-recapture models to estimate trend in a brown bear population

J. Andrew Royle, Tabitha A. Graves, J. S. Waller, 2019, Scientific Reports.

Observer‐free experimental evaluation of habitat and distance effects on the detection of anuran and bird vocalizations

J. Andrew Royle, M. Forstner, Paul S Crump, 2018, Ecology and evolution.

Spatial Statistical Modeling in Biology

J. Andrew Royle, 2002 .

Small mammal use of native warm‐season and non‐native cool‐season grass forage fields

J. Andrew Royle, C. Moorman, S. Converse, 2015 .

LEAD POISONING IN CAPTIVE ANDEAN CONDORS (VULTUR GRYPHUS)

J. Andrew Royle, S. H. Fritts, J. W. Carpenter, 2006, Journal of wildlife diseases.

Spatial capture–recapture with partial identity: An application to camera traps

J. Andrew Royle, Ben C. Augustine, Christopher B. Satter, 2018 .

CAPTURE-RECAPTURE WITH PARTIAL IDENTITY : AN APPLICATION TO CAMERA TRAPS By

J. Andrew Royle, Ben C. Augustine, Christopher B. Satter, 2017 .

Migratory connectivity of a widely distributed songbird, the American redstart (Setophaga ruticilla)

J. Andrew Royle, P. Marra, D. Norris, 2006 .

Population abundance, size structure and sex-ratio in an insular lizard

J. Andrew Royle, G. Tavecchia, S. Tenan, 2013 .

Modeling spatial variation in avian survival and residency probabilities.

J. Andrew Royle, B. Gardner, D. Desante, 2010, Ecology.

Linear Models, Generalized Linear Models (GLMs), and Random Effects Models: The Components of Hierarchical Models

J. Andrew Royle, M. Kéry, 2015 .

Movement of Reservoir-Stocked Riverine Fish between Tailwaters and Rivers

J. Andrew Royle, E. Marschall, R. Stein, 2008 .

Use of spatial capture–recapture to estimate density of Andean bears in northern Ecuador

J. Andrew Royle, Angela K. Fuller, Dana J. Morin, 2017, Ursus.

Assessment of bias in US waterfowl harvest estimates

J. Andrew Royle, P. Padding, 2012, Wildlife Research.

Comparing spatial capture–recapture modeling and nest count methods to estimate orangutan densities in the Wehea Forest, East Kalimantan, Indonesia

J. Andrew Royle, B. Loken, Yaya Rayadin, 2015 .

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea

J. Andrew Royle, M. V. Jiménez-Franco, J. Calvo, 2016, Scientific Reports.

Surplus Production Modeling of Scaup Population Dynamics Progress Report 25 February 2004

J. Andrew Royle, F. Johnson, G. S. Boomer, 2004 .

Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

J. Andrew Royle, Danielle I. Rappaport, D. Morton, 2020, Ecological Indicators.

Modeling Trends from North American Breeding Bird Survey Data: A Spatially Explicit Approach

J. Andrew Royle, J. Sauer, K. Pardieck, 2013, PloS one.

Design of Single-Season Occupancy Studies

J. Andrew Royle, J. Nichols, K. Pollock, 2017 .

Concepts: Assessing Tiger Population Dynamics Using Capture–Recapture Sampling

J. Andrew Royle, J. Nichols, K. U. Karanth, 2017 .

Density Estimation in Terrestrial Chelonian Populations Using Spatial Capture–Recapture and Search–Encounter Surveys

J. Andrew Royle, Haley Turner, 2022, Journal of Herpetology.

Evaluation of a two-season banding program to estimate and model migratory bird survival.

J. Andrew Royle, Guthrie S. Zimmerman, G. S. Boomer, 2021, Ecological applications : a publication of the Ecological Society of America.

Band reporting probabilities for mallards recovered in the United States and Canada

J. Andrew Royle, Guthrie S. Zimmerman, M. Koneff, 2013 .

Population size and stopover duration estimation using mark–resight data and Bayesian analysis of a superpopulation model

J. Andrew Royle, W. Kendall, J. Lyons, 2016, Biometrics.

Hierarchical modeling of cluster size in wildlife surveys

J. Andrew Royle, 2008 .

USING THE NORTH AMERICAN BREEDING BIRD SURVEY AS A TOOL FOR CONSERVATION: A CRITIQUE OF BART ET AL. (2004)

J. Andrew Royle, J. Nichols, W. Link, 2005 .

Spatial dynamic N‐mixture models with interspecific interactions

J. Andrew Royle, Angela K. Fuller, Qing Zhao, 2022, Methods in Ecology and Evolution.

Traffic Effects on Bird Counts on North American Breeding Bird Survey Routes

J. Andrew Royle, J. Sauer, E. Griffith, 2010, The Auk.

Effects of Turtle Excluder Devices (TEDs) on Loggerhead Sea Turtle Strandings with Implications for Conservation

J. Andrew Royle, L. Crowder, S. R. Hopkins-Murphy, 1995 .

Occupancy Patterns of Breeding American Black Ducks

J. Andrew Royle, P. Devers, Anthony J. Roberts, 2019, The Journal of Wildlife Management.

Integrated distance sampling models for simple point counts

J. Andrew Royle, Tyler A. Hallman, M. Kéry, 2022, 2211.17229.

Estimating landscape resistance to dispersal

J. Andrew Royle, Tabitha A. Graves, P. Beier, 2014, Landscape Ecology.

Bayesian analysis of multi-state data with individual covariates for estimating genetic effects on demography

J. Andrew Royle, S. Converse, R. Urbanek, 2011, Journal of Ornithology.

EXPERIMENTAL LEAD POISONING IN TURKEY VULTURES (CATHARTES AURA)

J. Andrew Royle, S. H. Fritts, J. W. Carpenter, 2003, Journal of wildlife diseases.

Exchange algorithms for constructing large spatial designs

J. Andrew Royle, J. A Royle, 2002 .

Large-scale variation in density of an aquatic ecosystem indicator species

J Andrew Royle, J. Andrew Royle, Chris Sutherland, 2018, Scientific Reports.

A hierarchical model for spatial capture-recapture data.

J Andrew Royle, J. Andrew Royle, Kevin V Young, 2008, Ecology.

Generalized site occupancy models allowing for false positive and false negative errors.

J Andrew Royle, J. Andrew Royle, William A Link, 2006, Ecology.

Analysis of Capture–Recapture Models with Individual Covariates Using Data Augmentation

J Andrew Royle, J. Andrew Royle, 2008, Biometrics.

Relative Abundance Models for Population Dynamics

J. Andrew Royle, M. Kéry, 2021 .

Modeling Abundance with Counts of Unmarked Individuals in Closed Populations: Binomial N-mixture Models

J. Andrew Royle, M. Kéry, 2015 .

Generalized estimators of avian abundance from count survey data

J. Andrew Royle, 2004 .

DISTRIBUTION, ABUNDANCE, AND HABITAT AFFINITIES OF THE COASTAL PLAIN SWAMP SPARROW

J. Andrew Royle, S. Droege, J. Beadell, 2003 .

Demographic Analysis from Summaries of an Age‐Structured Population

J Andrew Royle, J. Andrew Royle, William A Link, 2003, Biometrics.

Hierarchical modeling of an invasive spread: the Eurasian Collared-Dove Streptopelia decaocto in the United States.

J Andrew Royle, J. Andrew Royle, Florent Bled, 2011, Ecological applications : a publication of the Ecological Society of America.

Parameter-expanded data augmentation for Bayesian analysis of capture–recapture models

J. Andrew Royle, R. Dorazio, 2012, Journal of Ornithology.

Estimation of stream salamander (Plethodontidae, Desmognathinae and Plethodontinae) populations in Shenandoah National Park, Virginia, USA

J. Andrew Royle, J. Sauer, Jennifer Shirk, 2005 .

Integrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River

J. Andrew Royle, Lori M. Brown, M. Breece, 2020, Canadian Journal of Fisheries and Aquatic Sciences.

Tigers on trails: occupancy modeling for cluster sampling.

J. Andrew Royle, J E Hines, J D Nichols, 2009, Ecological applications : a publication of the Ecological Society of America.

Estimating species – area relationships by modeling abundance and frequency subject to incomplete sampling

J Andrew Royle, J. Andrew Royle, Yuichi Yamaura, 2016, Ecology and evolution.

Importance of riparian forest corridors for the ocelot in agricultural landscapes

J. Andrew Royle, N. Pasqualotto, N. F. Versiani, 2018, Journal of Mammalogy.

Infections after shark attacks in Australia.

J. Andrew Royle, N. Gilroy, G. Eagles, 1997, The Pediatric infectious disease journal.

Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal

J Andrew Royle, J. Andrew Royle, Paul Beier, 2013, Molecular ecology.

Bayesian inference in camera trapping studies for a class of spatial capture-recapture models.

J Andrew Royle, J. Andrew Royle, Arjun M Gopalaswamy, 2009, Ecology.

Spatial Statistical Modeling in Biology

J. Andrew Royle, 2002 .

Modelling predation by transient leopard seals for an ecosystem-based management of Southern Ocean fisheries

J. Andrew Royle, J. Forcada, I. Staniland, 2009 .

THE ROLE OF SPECIES ABUNDANCE IN DETERMINING BREEDING ORIGINS OF MIGRATORY BIRDS WITH STABLE ISOTOPES

J. Andrew Royle, D. Rubenstein, 2004, Ecological Applications.

Density estimation in tiger populations: combining information for strong inference.

J Andrew Royle, J. Andrew Royle, Mohan Delampady, 2012, Ecology.

Modeling wetland change along the United States Atlantic Coast

J. Andrew Royle, M. Koneff, 2004 .

Estimating population density and connectivity of American mink using spatial capture-recapture.

J Andrew Royle, J. Andrew Royle, Angela K. Fuller, 2016, Ecological applications : a publication of the Ecological Society of America.

Models for inference in dynamic metacommunity systems.

J Andrew Royle, J. Andrew Royle, Marc Kéry, 2010, Ecology.

Modeling the effects of environmental disturbance on wildlife communities: avian responses to prescribed fire.

J Andrew Royle, J. Andrew Royle, William M Block, 2009, Ecological applications : a publication of the Ecological Society of America.

Site Occupancy Models with Heterogeneous Detection Probabilities

J Andrew Royle, J. Andrew Royle, 2006, Biometrics.

Spatial capture--recapture models for jointly estimating population density and landscape connectivity.

J Andrew Royle, J. Andrew Royle, Tabitha A. Graves, 2013, Ecology.

Hierarchical models for estimating density from DNA mark-recapture studies.

J Andrew Royle, J. Andrew Royle, Beth Gardner, 2009, Ecology.

Migratory behavior and winter geography drive differential range shifts of eastern birds in response to recent climate change

J. Andrew Royle, Clark S. Rushing, K. Pardieck, 2020, Proceedings of the National Academy of Sciences.

Extreme uncertainty and unquantifiable bias do not inform population sizes

J. Andrew Royle, Philipp H. Boersch-Supan, Rob W. Martin, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Web-based Supplementary Materials for “ Modeling Individual Effects in the Cormack-Jolly-Seber Model : A State-space Formulation ”

J Andrew Royle, J. Andrew Royle, 2010 .

Hierarchical distance-sampling models to estimate population size and habitat-specific abundance of an island endemic.

J Andrew Royle, J. Andrew Royle, Marc Kery, 2012, Ecological applications : a publication of the Ecological Society of America.

Biodiversity of man-made open habitats in an underused country: a class of multispecies abundance models for count data

J. Andrew Royle, Y. Yamaura, S. Makino, 2012, Biodiversity and Conservation.

Spatially explicit inference for open populations: estimating demographic parameters from camera-trap studies.

J Andrew Royle, J. Andrew Royle, Beth Gardner, 2010, Ecology.

Estimating migratory connectivity of birds when re-encounter probabilities are heterogeneous

J. Andrew Royle, P. Marra, Jeffrey A. Hostetler, 2014, Ecology and evolution.

Use of Spatial Capture‐Recapture Modeling and DNA Data to Estimate Densities of Elusive Animals

J Andrew Royle, J. Andrew Royle, Marc Kéry, 2010, Conservation biology : the journal of the Society for Conservation Biology.

Spatial Mark-Resight for Categorically Marked Populations with an Application to Genetic Capture-Recapture

J. Andrew Royle, Ben C. Augustine, Jason T. Fisher, 2018, bioRxiv.

Sexual selection affects local extinction and turnover in bird communities

J Andrew Royle, J. Andrew Royle, James D Nichols, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Importance of sampling design and analysis in animal population studies: a comment on Sergio et al.

J. Andrew Royle, M. Kéry, Hans Schmid, 2007 .

Accounting for non‐independent detection when estimating abundance of organisms with a Bayesian approach

J. Andrew Royle, D. MacKenzie, M. Kéry, 2011 .

Adaptive Sampling for Spatial Capture-Recapture: An efficient sampling scheme for rare or patchily distributed species

J. Andrew Royle, Angela K. Fuller, Jeffrey Andrew Royle, 2018, bioRxiv.

Modeling structured population dynamics using data from unmarked individuals.

J Andrew Royle, J. Andrew Royle, Yoichiro Kanno, 2014, Ecology.

Spatially explicit dynamic N-mixture models

J. Andrew Royle, G. S. Boomer, Qing Zhao, 2017, Population Ecology.

Markov models for community dynamics allowing for observation error.

J Andrew Royle, J. Andrew Royle, Keiichi Fukaya, 2013, Ecology.

Fitting Models Using the Bayesian Modeling Software BUGS and JAGS

J. Andrew Royle, M. Kéry, 2015 .

ESTIMATING POPULATION TRENDS WITH A LINEAR MODEL: TECHNICAL COMMENTS

J. Andrew Royle, W. Link, J. Sauer, 2004 .

Integrated Modeling of Habitat and Occupancy Dynamics

J. Andrew Royle, J. Nichols, K. Pollock, 2017 .

Know what you don't know: Embracing state uncertainty in disease‐structured multistate models

J. Andrew Royle, Matthijs Hollanders, 2022, Methods in Ecology and Evolution.

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea

J. Andrew Royle, M. V. Jiménez-Franco, J. Calvo, 2016, Scientific reports.

Assessing the feasibility of developing a four-dimensional (4-D) interpolator for use in impaired waters listing assessment

J. Andrew Royle, E. Hofmann, F. Curriero, 2008 .

Integrated modeling predicts shifts in waterbird population dynamics under climate change

J. Andrew Royle, G. S. Boomer, Qing Zhao, 2019, Ecography.

10 – MODELING POPULATION DYNAMICS

J. Andrew Royle, R. Dorazio, 2009 .

Spatial Capture-Recapture

J. Andrew Royle, B. Gardner, R. Sollmann, 2013 .

An open-population hierarchical distance sampling model.

J Andrew Royle, J. Andrew Royle, Rahel Sollmann, 2015, Ecology.

ScholarWorks@UMass Amherst ScholarWorks@UMass Amherst

J. Andrew Royle, Angela K. Fuller, L. Komoroske, 2022 .

RESEARCH NOTES: THE EFFECT OF REWARD BAND VALUE ON MID-CONTINENT MALLARD BAND REPORTING RATES

J. Andrew Royle, Pamela R. Garrettson, 2005 .

Modeling Spatial Variation in Waterfowl Band-Recovery Data

J. Andrew Royle, J. Dubovsky, 2001 .

The unmarked R package: Twelve years of advances in occurrence and abundance modelling in ecology

J. Andrew Royle, Adam D. Smith, M. Kéry, 2023, Methods in Ecology and Evolution.

Modeling Population Dynamics With Count Data

J. Andrew Royle, M. Kéry, 2021 .

Large-Scale Monitoring of Shorebird Populations using Count Data and N-Mixture Models: Black Oystercatcher (Haematopus bachmani) Surveys by Land and Sea

J. Andrew Royle, J. Lyons, David R. Nysewander, 2012 .

Concepts and Practices: Estimating Abundance of Prey Species Using Hierarchical Model-Based Approaches

J. Andrew Royle, N. S. Kumar, A. Gopalaswamy, 2017 .

Population abundance, size structure and sex-ratio in an insular lizard

J. Andrew Royle, G. Tavecchia, S. Tenan, 2013 .

FUNFITS: data analysis and statistical tools for estimating functions

Douglas W. Nychka, J. Andrew Royle, Perry D. Haaland, 2008 .

Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal

J. Andrew Royle, Tabitha A. Graves, P. Beier, 2013, Molecular ecology.