Jeroen de Ridder

发表

Highlights from the 5(th) International Society for Computational Biology Student Council Symposium at the 17(th) Annual International Conference on Intelligent

Thomas Abeel, Lucia Peixoto, Jeroen de Ridder, 2009 .

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex

Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt, Ahmed Mahfouz, 2015, PLoS Comput. Biol..

Inferring combinatorial association logic networks in multimodal genome-wide screens

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jan Bot, 2010, Bioinform..

A Portable and Scalable Workflow for Detecting Structural Variants in Whole-Genome Sequencing Data

Jason Maassen, Arnold Kuzniar, Carl Shneider, 2018, 2018 IEEE 14th International Conference on e-Science (e-Science).

The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013

Manuel Corpas, Venkata P. Satagopam, Theodore Alexandrov, 2013, PLoS Comput. Biol..

ECCB 2016: The 15th European Conference on Computational Biology

Marcel J. T. Reinders, Sanne Abeln, Jaap Heringa, 2016, Bioinform..

Computational approaches for dissecting cancer pathways from insertional mutagenesis data

Jeroen de Ridder, 2011 .

Pattern recognition in bioinformatics

Marcel J. T. Reinders, Dick de Ridder, Jeroen de Ridder, 2013, Briefings Bioinform..

Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jeroen de Ridder, 2006, PLoS Comput. Biol..

FERAL: network-based classifier with application to breast cancer outcome prediction

Amin Allahyar, Jeroen de Ridder, J. Ridder, 2015, Bioinform..

Kinds of knowledge, limits of science

Jeroen de Ridder, 2018 .

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

Marcel J. T. Reinders, Erdogan Taskesen, Jeroen de Ridder, 2010, BMC Bioinformatics.

Highlights from the 5th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology

Thomas Abeel, Lucia Peixoto, Jeroen de Ridder, 2009, BMC Bioinformatics.

A data-driven interactome of synergistic genes improves network-based cancer outcome prediction

Amin Allahyar, Jeroen de Ridder, Joske Ubels, 2018, bioRxiv.

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia

Marcel J. T. Reinders, Erdogan Taskesen, Sepideh Babaei, 2015, BMC Bioinformatics.

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator

Thomas Abeel, Nils Gehlenborg, Venkata P. Satagopam, 2013, PLoS Comput. Biol..

Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jan Bot, 2007, ISMB/ECCB.

Mutational Genomics for Cancer Pathway Discovery

Marcel J. T. Reinders, Alistair G. Rust, Lodewyk F. A. Wessels, 2013, PRIB.

Highlights from the Fifth International Society for Computational Biology (ISCB) Student Council Symposium

Thomas Abeel, Lucia Peixoto, Jeroen de Ridder, 2009 .

Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis

Marcel J. T. Reinders, Sepideh Babaei, Jeroen de Ridder, 2011, PRIB.

Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities

Thomas Abeel, Pieter Meysman, Olugbenga O. Oluwagbemi, 2014, PLoS Comput. Biol..

Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion

Marcel J. T. Reinders, Sepideh Babaei, Jeroen de Ridder, 2013, BMC Bioinformatics.

Scale-space measures for graph topology link protein network architecture to function

Jeroen de Ridder, Marc Hulsman, Christos M. Dimitrakopoulos, 2014, Bioinform..

Mechanistic artefact explanation

Jeroen de Ridder, J. Ridder, 2006 .

TOPSPIN: a novel algorithm to predict treatment specific survival in cancer

Jeroen de Ridder, Joske Ubels, P. Sonneveld, 2017 .

Why Only Externalists Can Be Steadfast

Jeroen de Ridder, 2014 .

Prioritization of Candidate Disease Genes using Microarray Data and Functional Relations

Jeroen de Ridder, Oliver Verver, J. Ridder, 2007 .

12 Grand Challenges in Single-Cell Data Science

Alexander Zelikovsky, Fabian J. Theis, Marcel J. T. Reinders, 2019, PeerJ Prepr..

Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

Wouter Meuleman, Ludo Pagie, Johann de Jong, 2013, Cell.

Mapping and phasing of structural variation in patient genomes using nanopore sequencing

Edwin Cuppen, Tobias Marschall, Wigard P. Kloosterman, 2017, bioRxiv.