O. Vaske

发表

Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples.

Jordan M. Eizenga, Holly C. Beale, B. Paten, 2020, JCO clinical cancer informatics.

Data sharing for clinical utility

David Haussler, Olena Morozova Vaske, Isabel Bjork, 2019, Cold Spring Harbor molecular case studies.

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design

Gregory P. Way, Jo Lynne Rokita, D. Haussler, 2019, Cell reports.

Genomic landscape of 261 childhood cancer patient-derived xenograft models

Gregory P. Way, Jo Lynne Rokita, D. Haussler, 2019, bioRxiv.

The case for using Mapped Exonic Non-Duplicate (MEND) read counts in RNA-Seq experiments: examples from pediatric cancer datasets

Holly C. Beale, Lauren M. Sanders, D. Haussler, 2019, bioRxiv.

Barriers to accessing public cancer genomic data

David Haussler, Katrina Learned, Ann Durbin, 2019, Scientific Data.

Data sharing for pediatric cancers

D. Haussler, O. Vaske, 2019, Science.

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor

Holly C. Beale, Lauren M. Sanders, D. Haussler, 2019, Cold Spring Harbor molecular case studies.

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

Holly C. Beale, Lauren M. Sanders, D. Haussler, 2019 .

Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer.

Allison P. Heath, K. Davis, A. Kerlavage, 2021, JCO clinical cancer informatics.

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design

David Haussler, Jacob Pfeil, Olena Morozova Vaske, 2019, Cell reports.

TPP1 promoter mutations cooperate with TERT promoter mutations to lengthen telomeres in melanoma

Holly C. Beale, C. Connelly, J. Kirkwood, 2022, Science.

The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science

Allison P. Heath, Meen Chul Kim, Jena V. Lilly, 2022, bioRxiv.

Cancer microenvironment and genomics: evolution in process

Melissa B. Davis, Lauren M. Sanders, D. Haussler, 2021, Clinical & Experimental Metastasis.

Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors

Lauren M Sanders, Holly C. Beale, Lauren M. Sanders, 2022, Communications biology.

Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures

David Haussler, Holly C Beale, Lauren M Sanders, 2020, PLoS Comput. Biol..

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma

Lauren M Sanders, Holly C. Beale, Lauren M. Sanders, 2020, GigaScience.

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

Guo Ci Teo, Allison P. Heath, Marilyn M. Li, 2020, Cell.

Author Correction: Loss of MAT2A compromises methionine metabolism and represents a vulnerability in H3K27M mutant glioma by modulating the epigenome

Lauren M Sanders, Lauren M. Sanders, M. Moran, 2022, Nature Cancer.

Loss of MAT2A compromises methionine metabolism and represents a vulnerability in H3K27M mutant glioma by modulating the epigenome

Lauren M Sanders, Lauren M. Sanders, M. Moran, 2022, Nature Cancer.

Phenotypic spectrum and transcriptomic profile associated with germline variants in TRAF7

M. Reijnders, W. Chung, A. Munnich, 2020, Genetics in Medicine.

Cancer microenvironment and genomics: evolution in process

Lauren M Sanders, Lauren M. Sanders, D. Haussler, 2021, Clinical & Experimental Metastasis.

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

David Haussler, Jingchun Zhu, Katrina Learned, 2019, JAMA network open.

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

Holly C. Beale, Lauren M. Sanders, D. Haussler, 2021, GigaScience.

Metastatic pediatric sclerosing epithelioid fibrosarcoma

V. Jobanputra, J. Collier, K. Wrzeszczynski, 2021, Cold Spring Harbor molecular case studies.

A method for campus-wide SARS-CoV-2 surveillance at a large public university

E. L. Miller, E. Kephart, A. M. Kilpatrick, 2021, PloS one.

Identification and in vitro validation of neoantigens for immune activation against high-risk pediatric leukemia cells

Chunfen Zhang, A. Narendran, M. Jain, 2021, Human vaccines & immunotherapeutics.

A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma

Holly C. Beale, K. Learned, E. Kephart, 2021, Cells.

Barriers to accessing public cancer genomic data

Holly C. Beale, Lauren M. Sanders, D. Haussler, 2019, Scientific Data.

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design

D. Haussler, D. Wheeler, P. Raman, 2019, Cell reports.

Long-read sequencing for brain tumors

O. Vaske, William J. Shelton, Sara Zandpazandi, 2024, Frontiers in oncology.