Tetsuya Yomo

发表

Reliable End-to-End Molecular Communication with Packet Replication and Retransmission

Tadashi Nakano, Andrew W. Eckford, Taro Furubayashi, 2014, GLOBECOM 2014.

1SDP-04 Experimental evolution of artificial cell model(1SDP Developments in constructive approach towards cell synthesis,Symposium,The 51th Annual Meeting of the Biophysical Society of Japan)

Tetsuya Yomo, 2013 .

Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2009, Bioinform..

Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture

Hiroshi Shimizu, Tadashi Yamada, Chikara Furusawa, 2007, Biosyst..

Synthetic ecosystem of Escherichia coli for discovery of novel cooperative and self-adaptive algorithms

Kazufumi Hosoda, Tetsuya Yomo, Akiko Kashiwagi, 2008, BIONETICS.

Packet Replication and Noise in Reliable End-to-end Molecular Communication

Tadashi Nakano, Andrew W. Eckford, Taro Furubayashi, 2015, EAI Endorsed Trans. Creative Technol..

Adaptive LSH based on the particle swarm method with the attractor selection model for fast approximation of Gaussian process regression

Yutaka Nakamura, Hiroshi Ishiguro, Yuya Okadome, 2014, Artificial Life and Robotics.

Evolution of Genetic Codes through Isologous Diversification of Cellular States

Kunihiko Kaneko, Hiroaki Takagi, Tetsuya Yomo, 2000, Artificial Life.

Thermodynamics-Based Strategy to Achieve Balance between Robustness and Performance for Self-Organized Network Controls

Masayuki Murata, Daichi Kominami, Takuya Iwai, 2014, 2014 IEEE Eighth International Conference on Self-Adaptive and Self-Organizing Systems.

Thermodynamics-Based Entropy Adjustment for Robust Self-Organized Network Controls

Masayuki Murata, Daichi Kominami, Takuya Iwai, 2014, 2014 IEEE 38th Annual Computer Software and Applications Conference.

Free-Energy-Based Design Policy for Robust Network Control against Environmental Fluctuation

Masayuki Murata, Daichi Kominami, Takuya Iwai, 2015, TheScientificWorldJournal.

Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome

Tetsuya Yomo, Akiko Kashiwagi, Kotaro Mori, 2009, Biosyst..

Constructing an Artificial Self-replication System of Genetic Information from RNA and Proteins

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2010, ALIFE.

A model-based analysis method for detection of single-base substitution using resequencing microarrays

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2009 .

Quantitative expression analysis using oligonucleotide microarrays based on a physico-chemical model

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2008, BIONETICS.

Responses of Fluctuating Biological Systems

Katsuhiko Sato, Kunihiko Kaneko, Tetsuya Yomo, 2006, BioADIT.

Built-In Synthetic Gene Circuits in Escherichia coli – Methodology and Applications

Tetsuya Yomo, Bei-Wen Ying, T. Yomo, 2012 .

Reliable End-to-End Molecular Communication with Packet Replication and Retransmission

Tadashi Nakano, Andrew W. Eckford, Taro Furubayashi, 2014, 2015 IEEE Global Communications Conference (GLOBECOM).

Attractor Selection as Self-Adaptive Control Mechanism for Communication Networks

Kenji Leibnitz, Masayuki Murata, Tetsuya Yomo, 2011 .

Analysis of stochasticity in promoter activation by using a dual-fluorescence reporter system

Hiroshi Shimizu, Chikara Furusawa, Tetsuya Yomo, 2009, Biosyst..

Global/temporal gene expression analysis of Escherichia coli in the early stages of symbiotic relationship development with the cellular slime mold Dictyostelium discoideum

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, 2009, Biosyst..

Construction of bacteria-eukaryote synthetic mutualism

Kazufumi Hosoda, Shingo Suzuki, Tetsuya Yomo, 2013, Biosyst..

Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing

Tetsuya Yomo, Norikazu Ichihashi, Takuyo Aita, 2013, Comput. Biol. Chem..

Gradual development of protein-like global structures through functional selection

Masaki Sasai, Seiji Saito, Tetsuya Yomo, 1999, Nature Structural Biology.

Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum

Tetsuya Yomo, Akiko Kashiwagi, Itaru Urabe, 2008, Biosyst..

Probabilistic transition from unstable predator-prey interaction to stable coexistence of Dictyostelium discoideum and Escherichia coli

Kazufumi Hosoda, Shingo Suzuki, Tetsuya Yomo, 2011, Biosyst..

Packet Fragmentation and Reassembly in Molecular Communication

Tadashi Nakano, Yutaka Okaie, Taro Furubayashi, 2016, IEEE Transactions on NanoBioscience.

Experimental Molecular Evolution Showing Flexibility of Fitness Leading to Coexistence and Diversification in Biological System

Tetsuya Yomo, Akiko Kashiwagi, Masato Katsuno, 2004, BioADIT.

3P301 Evolutionary Process for Creation of Flexibility of Bio-organisms

Tetsuya Yomo, Itaru Urabe, Yoichiro Ito, 2005 .

A High-Throughput Method to Quantify the Structural Properties of Individual Cell-Sized Liposomes by Flow Cytometry

Tadashi Sugawara, Tetsuya Yomo, Itaru Urabe, 2006, BioADIT.

Analysis of Fluctuation in Gene Expression Based on Continuous Culture System

Hiroshi Shimizu, Tadashi Yamada, Chikara Furusawa, 2006, BioADIT.

A Theory of Differentiation with Dynamic Clustering

Kunihiko Kaneko, Tetsuya Yomo, K. Kaneko, 1995, ECAL.

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2008, Bioinform..

In vitro evolution of proteins.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2006, Journal of bioscience and bioengineering.

Revised Sequence and Activity of Bacillus stearothermophilus Catalase I (Formerly Peroxidase)

Tetsuya Yomo, Satoshi Aihara, Itaru Urabe, 1992 .

Stochasticity in gene expression in a cell-sized compartment.

Tetsuya Yomo, T. Yomo, Hiroaki Suzuki, 2015, ACS synthetic biology.

Evolution of an arbitrary sequence in solubility

Yoichiro Ito, Tetsuya Yomo, Itaru Urabe, 2003 .

Ubiquity of log-normal distributions in intra-cellular reaction dynamics

Kunihiko Kaneko, Chikara Furusawa, Tetsuya Yomo, 2005, Biophysics.

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, 2007, BMC Genomics.

Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication.

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2012, Chemistry & biology.

Statistical analysis of discrete encapsulation of nanomaterials in colloidal capsules

Tetsuya Yomo, T. Yomo, Hiroaki Suzuki, 2012 .

Random Mutagenesis of Glutamine Synthetase from Escherichia coli; Correlation between Structure, Activity, and Fitness

Tetsuya Yomo, Itaru Urabe, T. Yomo, 1994 .

In vitro evolution of α-hemolysin using a liposome display

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2013, Proceedings of the National Academy of Sciences.

Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry.

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Langmuir : the ACS journal of surfaces and colloids.

Evolvability of random polypeptides through functional selection within a small library.

Tetsuya Yomo, Nobuhiko Tokuriki, Itaru Urabe, 2002, Protein engineering.

On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules.

Kunihiko Kaneko, Tetsuya Yomo, K. Kaneko, 2002, Journal of theoretical biology.

The Evolutionary Enhancement of Genotype–Phenotype Linkages in the Presence of Multiple Copies of Genetic Material

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2014, Chembiochem : a European journal of chemical biology.

Protein folding by the effects of macromolecular crowding

Tetsuya Yomo, Nobuhiko Tokuriki, Yuji Goto, 2004, Protein science : a publication of the Protein Society.

How selection affects phenotypic fluctuation

Yoichiro Ito, Kunihiko Kaneko, Tetsuya Yomo, 2009, Molecular systems biology.

Liposome-Based Liquid Handling Platform Featuring Addition, Mixing, and Aliquoting of Femtoliter Volumes

Soichiro Tsuda, Tetsuya Yomo, T. Yomo, 2014, PloS one.

Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2017, Proceedings of the National Academy of Sciences.

Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

Naoaki Ono, Chikara Furusawa, Tetsuya Yomo, 2010, BMC Genomics.

Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, 2007, Biophysics.

Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli.

Tetsuya Yomo, Itaru Urabe, Yuuki Hayashi, 2007, Journal of theoretical biology.

Isologous diversification: A theory of cell differentiation

Kunihiko Kaneko, Tetsuya Yomo, 1997 .

Quantifying epistatic interactions among the components constituting the protein translation system

Tetsuya Yomo, Tomoaki Matsuura, Takuyo Aita, 2009, Molecular systems biology.

Development of a reporter peptide that catalytically produces a fluorescent signal through α‐complementation

Tetsuya Yomo, Norikazu Ichihashi, T. Yomo, 2015, Protein science : a publication of the Protein Society.

Population Analysis of Liposomes with Protein Synthesis and a Cascading Genetic Network

Tetsuya Yomo, Takeshi Sunami, T. Yomo, 2008 .

In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume.

Tetsuya Yomo, Tomoaki Matsuura, Yasuhiko Kato, 2014, ACS synthetic biology.

An observation of the initial stage towards a symbiotic relationship.

Tetsuya Yomo, Itaru Urabe, Masahiko Todoriki, 2002, Bio Systems.

Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells.

Chikara Furusawa, Tetsuya Yomo, Takashi Hirasawa, 2008, Molecular bioSystems.

Plasticity of Fitness and Diversification Process During an Experimental Molecular Evolution

Tetsuya Yomo, Itaru Urabe, Wataru Noumachi, 2001, Journal of Molecular Evolution.

Population analysis of structural properties of giant liposomes by flow cytometry.

Masanori Fujinami, Tetsuya Yomo, Koichi Oguma, 2009, Langmuir : the ACS journal of surfaces and colloids.

Hydrodynamic trapping of Tetrahymena thermophila for the long-term monitoring of cell behaviors.

Kazufumi Hosoda, Tetsuya Yomo, T. Yomo, 2012, Lab on a chip.

Cell-free protein synthesis from a single copy of DNA in a glass microchamber.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2012, Lab on a chip.

Universality and flexibility in gene expression from bacteria to human.

Tetsuya Yomo, Masamitsu Iino, Hiroki R Ueda, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Quantification of structural properties of cell-sized individual liposomes by flow cytometry.

Tetsuya Yomo, Itaru Urabe, Tadashi Sugawara, 2006, Journal of bioscience and bioengineering.

Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2014, ACS synthetic biology.

Self-replication of circular DNA by a self-encoded DNA polymerase through rolling-circle replication and recombination

Tetsuya Yomo, Norikazu Ichihashi, Yoshihiro Sakatani, 2018, Scientific Reports.

Ribosome display for rapid protein evolution by consecutive rounds of mutation and selection.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2010, Methods in molecular biology.

Mathematical model allowing the coexistence of closely related competitors at the initial stage of evolution

Tetsuya Yomo, Itaru Urabe, Wei-Zhong Xu, 2006, Researches on Population Ecology.

Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining

Kunihiko Kaneko, Tetsuya Yomo, Kiyoshi Ohnuma, 2006, BMC Cell Biology.

Can an Arbitrary Sequence Evolve Towards Acquiring a Biological Function?

Tetsuya Yomo, Hiroshi Sakata, Itaru Urabe, 2003, Journal of Molecular Evolution.

Constructive Approaches for Understanding the Origin of Self-Replication and Evolution

Tetsuya Yomo, Norikazu Ichihashi, T. Yomo, 2016, Life.

Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model.

Erich Bornberg-Bauer, Hue Sun Chan, Tetsuya Yomo, 2010, Biophysical journal.

A transcription and translation-coupled DNA replication system using rolling-circle replication

Tetsuya Yomo, Norikazu Ichihashi, Yoshihiro Sakatani, 2015, Scientific Reports.

Expression of a cascading genetic network within liposomes

Tetsuya Yomo, Itaru Urabe, T. Yomo, 2004, FEBS letters.

Programmed vesicle fusion triggers gene expression.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2011, Langmuir : the ACS journal of surfaces and colloids.

Constructing partial models of cells.

Hiroshi Kita, Tetsuya Yomo, Norikazu Ichihashi, 2010, Cold Spring Harbor perspectives in biology.

Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Journal of nucleic acids.

Dynamic clustering of bacterial population

Tetsuya Yomo, Itaru Urabe, Elizabeth P. Ko, 1994 .

Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations

Takao Suzuki, Tetsuya Yomo, Itaru Urabe, 2006, Biophysics.

Transition from Positive to Neutral in Mutation Fixation along with Continuing Rising Fitness in Thermal Adaptive Evolution

Naoaki Ono, Chikara Furusawa, Tetsuya Yomo, 2010, PLoS genetics.

Construction of Escherichia coli gene expression level perturbation collection.

Tetsuya Yomo, Kotaro Mori, T. Yomo, 2009, Metabolic engineering.

Defined DNA-mediated assemblies of gene-expressing giant unilamellar vesicles.

Tetsuya Yomo, Maik Hadorn, T. Yomo, 2013, Langmuir : the ACS journal of surfaces and colloids.

Fate of a mutant emerging at the initial stage of evolution

Tetsuya Yomo, Itaru Urabe, T. Yomo, 1996, Researches on Population Ecology.

Kinetic Analysis of the Entire RNA Amplification Process by Qβ Replicase*

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2007, Journal of Biological Chemistry.

Evolution of an Arbitrary Sequence in Solubility

Yoichiro Ito, Tetsuya Yomo, Itaru Urabe, 2004, Journal of Molecular Evolution.

A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA.

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2008, RNA.

Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2012, Proceedings of the National Academy of Sciences.

On the relation between fluctuation and response in biological systems

Yoichiro Ito, Kunihiko Kaneko, Tetsuya Yomo, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2010, Langmuir : the ACS journal of surfaces and colloids.

Liposome display for in vitro selection and evolution of membrane proteins

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2014, Nature Protocols.

Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction.

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2008, Langmuir : the ACS journal of surfaces and colloids.

Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions.

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2010, Langmuir : the ACS journal of surfaces and colloids.

Global change in Escherichia coli gene expression in initial stage of symbiosis with Dictyostelium cells.

Chikara Furusawa, Tetsuya Yomo, Itaru Urabe, 2004, Bio Systems.

Femtoliter compartment in liposomes for in vitro selection of proteins.

Tetsuya Yomo, Tomoaki Matsuura, Itaru Urabe, 2006, Analytical biochemistry.