Fredrik Levander

发表

AN EVALUATION APPROACH FOR THE QUANTITATIVE LABEL-FREE LC-MS WORKFLOW

Marianne Sandin, Morten Krogh, Karin Hansson, 2009 .

Representation of selected-reaction monitoring data in the mzQuantML data standard

Fredrik Levander, Da Qi, Craig Lawless, 2015, Proteomics.

Improved Label-Free LC-MS Analysis by Wavelet-Based Noise Rejection

Piera Versura, Fredrik Levander, Sergio Cerutti, 2010, Journal of biomedicine & biotechnology.

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis.

Marianne Sandin, Fredrik Levander, Johan Teleman, 2015, Journal of proteome research.

Is label‐free LC‐MS/MS ready for biomarker discovery?

Fredrik Levander, Aakash Chawade, Marianne Sandin, 2015, Proteomics. Clinical applications.

Keeping track of gel-based proteomics experiments using the open-source Proteios software

Fredrik Levander, Peter James, Jari Häkkinen, 2006 .

DIANA - algorithmic improvements for analysis of data-independent acquisition MS data

Lars Malmström, Fredrik Levander, Johan Teleman, 2015, Bioinform..

Automated reporting from gel‐based proteomics experiments using the open source Proteios database application

Fredrik Levander, Peter James, Jari Häkkinen, 2007, Proteomics.

Generic workflow for quality assessment of quantitative label‐free LC‐MS analysis

Karin Hansson, Fredrik Levander, Morten Krogh, 2011, Proteomics.

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

Martin Eisenacher, Juan Antonio Vizcaíno, Henning Hermjakob, 2013, Database J. Biol. Databases Curation.

Proteomics Data Collection – 4th ProDaC Workshop 15 August 2008, Amsterdam, The Netherlands

Lennart Martens, Harald Barsnes, Helmut E Meyer, 2009, Proteomics.

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

Fredrik Levander, Jakob Willforss, Valentina Siino, 2020, bioRxiv.

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

Fredrik Levander, Thorsteinn S. Rögnvaldsson, Daniel Dalevi, 2004, Bioinform..

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

Oliver Horlacher, Kiyoko F. Aoki-Kinoshita, Fredrik Levander, 2019, Nature Communications.

NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis.

Fredrik Levander, Aakash Chawade, Jakob Willforss, 2018, Journal of proteome research.

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Oliver Horlacher, Kiyoko F. Aoki-Kinoshita, Fredrik Levander, 2018, bioRxiv.

mzML—a Community Standard for Mass Spectrometry Data*

Lennart Martens, Henning Hermjakob, Fredrik Levander, 2010, Molecular & Cellular Proteomics.

Automated quality control system for LC-SRM setups.

Fredrik Levander, Johan Teleman, Sofia Waldemarson, 2013, Journal of proteomics.

Proteomics Data Collection – 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

Lennart Martens, Helmut E Meyer, Martin Eisenacher, 2008, Proteomics.

Numerical Compression Schemes for Proteomics Mass Spectrometry Data*

Lars Malmström, Fredrik Levander, Johan Teleman, 2014, Molecular & Cellular Proteomics.

Design and Analysis of an All-optical Free-space Communication Link

Fredrik Levander, Per Sakari, 2002 .

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

Lennart Martens, Helmut E Meyer, Martin Eisenacher, 2007, Proteomics.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Fredrik Levander, Jari Häkkinen, Kristofer Wårell, 2009, Journal of proteome research.

Data processing methods and quality control strategies for label-free LC-MS protein quantification.

Fredrik Levander, Johan Teleman, Johan Malmström, 2014, Biochimica et biophysica acta.

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists*

Lennart Martens, Fredrik Levander, Matthew Chambers, 2011, Molecular & Cellular Proteomics.

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

Fredrik Levander, Jakob Willforss, Valentina Siino, 2021, BMC Bioinform..

A community proposal to integrate proteomics activities in ELIXIR

Lennart Martens, Martin Eisenacher, Wout Bittremieux, 2017, F1000Research.

Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments.

Fredrik Levander, Peter James, 2005, Journal of proteome research.

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

Fredrik Levander, Berend Snel, Svante Resjö, 2014, Journal of proteome research.

Targeted Proteomics Approach for Precision Plant Breeding.

Fredrik Levander, Aakash Chawade, Erik Alexandersson, 2016, Journal of proteome research.

Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry.

Fredrik Levander, Sergio Cerutti, Peter James, 2008, Analytical chemistry.

Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

Fredrik Levander, Ufuk Kirik, Mats Ohlin, 2017, Molecular immunology.

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

Fredrik Levander, Mats Ohlin, F. Levander, 2017, The Journal of allergy and clinical immunology.

Critical comparison of multidimensional separation methods for increasing protein expression coverage.

Fredrik Levander, Peter James, Paolo Cifani, 2012, Journal of proteome research.

Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification

Fredrik Levander, Johan Teleman, Peter James, 2012, Journal of proteome research.

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

Fredrik Levander, Aakash Chawade, Erik Alexandersson, 2014, Journal of proteome research.

Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

Fredrik Levander, Oscar Persson, Morten Krogh, 2009, Proteomics. Clinical applications.

Getting a grip on proteomics data – Proteomics Data Collection (ProDaC)

Lennart Martens, Harald Barsnes, Martin Eisenacher, 2009, Proteomics.

Automated batch filtering and recalibration of mass spectra for increased protein identification rates in high-throughput proteomics.

Fredrik Levander, Thorsteinn Rögnvaldsson, Peter James, 2003 .

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

Fredrik Levander, Johan Teleman, Aakash Chawade, 2016, Journal of proteome research.

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

Fredrik Levander, Jürgen Cox, Eugene Kolker, 2011, Journal of proteomics.