A. Hirata

发表

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase

H. Nishimasu, O. Nureki, R. Ishitani, 2009, Proceedings of the National Academy of Sciences.

Subunit D of RNA Polymerase from Methanosarcina acetivorans Contains Two Oxygen-labile [4Fe-4S] Clusters

E. Duin, D. Lessner, Faith H. Lessner, 2012, The Journal of Biological Chemistry.

Enzymatic and crystallographic characterization of archaeal tRNA splicing endonuclease

S. Yokobori, H. Hori, Chikako Iwashita, 2009, 2009 International Symposium on Micro-NanoMechatronics and Human Science.

Identification of a radical SAM enzyme involved in the synthesis of archaeosine.

Takuya Kawamura, S. Ohno, K. Ando, 2019, Nature chemical biology.

Structural and Enzymatic Analysis of Soybean β-Amylase Mutants with Increased pH Optimum*

B. Mikami, S. Utsumi, M. Adachi, 2004, Journal of Biological Chemistry.

The X-ray crystal structure of RNA polymerase from Archaea

Akira Hirata, K. Murakami, Katsuhiko S. Murakami, 2008, Nature.

The X-ray crystal structure of RNA polymerase from Archaea

K. Murakami, A. Hirata, B. J. Klein, 2008, Nature.

Archaeal RNA polymerase.

K. Murakami, A. Hirata, 2009, Current opinion in structural biology.

The X-ray crystal structure of the euryarchaeal RNA polymerase in an open clamp configuration

Tadayuki Imanaka, Akira Hirata, K. Murakami, 2014, Nature Communications.

Transfer RNA Synthesis and Regulation

T. Ueda, Kimitsuna Watanabe, K. Tomita, 2014, eLS.

Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA

R. Yamagami, Takuya Kawamura, Chie Tomikawa, 2018, Microorganisms.

Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m22G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures

T. Lowe, Tsutomu Suzuki, H. Atomi, 2019, Journal of bacteriology.

Folate‐/FAD‐dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures

D. Fourmy, R. Yamagami, S. Yoshizawa, 2016, Genes to cells : devoted to molecular & cellular mechanisms.

Substrate tRNA Recognition Mechanism of Eubacterial tRNA (m1A58) Methyltransferase (TrmI)*

Naoki Shigi, Chie Tomikawa, A. Ochi, 2015, The Journal of Biological Chemistry.

The tRNA Recognition Mechanism of Folate/FAD-dependent tRNA Methyltransferase (TrmFO)*

H. Nishimasu, O. Nureki, R. Ishitani, 2012, The Journal of Biological Chemistry.

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

T. Kanai, Chie Tomikawa, A. Ochi, 2010, Nucleic acids research.

Substrate tRNA Recognition Mechanism of a Multisite-specific tRNA Methyltransferase, Aquifex aeolicus Trm1, Based on the X-ray Crystal Structure*

Y. Bessho, S. Yokoyama, Ihsanawati, 2011, The Journal of Biological Chemistry.

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity

J. Banfield, A. Kanai, R. Yamagami, 2012, Nucleic acids research.

Recent Insights Into the Structure, Function, and Evolution of the RNA-Splicing Endonucleases

A. Hirata, 2019, Front. Genet..

The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity

K. Fujishima, H. Hori, A. Hirata, 2018, Nucleic acids research.

In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus, an extreme-thermophilic eubacterium.

R. Yamagami, Chie Tomikawa, H. Hori, 2015, Journal of biochemistry.

Genetic and Functional Analyses of Archaeal ATP-Dependent RNA Ligase in C/D Box sRNA Circularization and Ribosomal RNA Processing

C. Ho, Y. Takagi, Yancheng Liu, 2022, Frontiers in Molecular Biosciences.

A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation

A. Ishihama, T. Shimada, Masahiro Nakano, 2017, FEBS letters.

Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type.

B. Mikami, S. Utsumi, M. Adachi, 2004, Biochemistry.

Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop

H. Hori, A. Hirata, Tsubasa Kitajima, 2011, Nucleic acids research.

Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon

Takuya Kawamura, S. Ohno, T. Yokogawa, 2015, Nucleic acids research.

The Catalytic Domain of Topological Knot tRNA Methyltransferase (TrmH) Discriminates between Substrate tRNA and Nonsubstrate tRNA via an Induced-fit Process*

O. Nureki, K. Makabe, K. Kuwajima, 2013, The Journal of Biological Chemistry.

Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-N2-) Methyltransferase (Trm11-Trm112 Complex)

Kazuki Okada, R. Yamagami, S. Ohmori, 2022, International journal of molecular sciences.

Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules

H. Hori, A. Hirata, T. Tamura, 2016, Nucleic acids research.

Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature‐sensitive

K. Murakami, T. Kanai, T. Imanaka, 2008, Molecular microbiology.

Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition

N. Shimizu, H. Hori, S. Saijo, 2019, Nucleic acids research.

Mycobacterium abscessus Pulmonary Infection under Treatment with Tocilizumab.

A. Murasawa, S. Ito, I. Narita, 2015, Internal medicine.