Katrina M. Waters

发表

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus

Chengjun Li, Jason E. McDermott, Hugh D. Mitchell, 2016, BMC Systems Biology.

High-throughput visual analytics biological sciences: turning data into knowledge

Mudita Singhal, Joshua N. Adkins, Christopher S. Oehmen, 2006, SC.

Breaking the High-Throughput Bottleneck: New tools help biologists integrate complex datasets

Mudita Singhal, Eric G. Stephan, Bobbie-Jo M. Webb-Robertson, 2006 .

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Christopher S. Oehmen, Bobbie-Jo M. Webb-Robertson, William R. Cannon, 2010, Bioinform..

Improved quality control processing of peptide-centric LC-MS proteomics data

Joel G. Pounds, Bobbie-Jo M. Webb-Robertson, Thomas O. Metz, 2011, Bioinform..

Hypergraph models of biological networks to identify genes critical to pathogenic viral response

Qing Tan, Cliff Joslyn, Brenda Praggastis, 2020, BMC Bioinform..

Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools

Elena S. Peterson, Susan C. Tilton, Katrina M. Waters, 2012, BMC Bioinformatics.

How Adverse Outcome Pathways Can Aid the Development and Use of Computational Prediction Models for Regulatory Toxicology

Maurice Whelan, Hugh J. Byrne, Alicia Paini, 2016, Toxicological sciences : an official journal of the Society of Toxicology.

Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

Aaron R. Phillips, Elena S. Peterson, Susan C. Tilton, 2019, BMC Bioinformatics.

Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager

Mudita Singhal, Eric G. Stephan, H. Steven Wiley, 2007, Bioinform..

An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses

Mudita Singhal, Ian Gorton, Tara D. Gibson, 2008, 2008 IEEE Fourth International Conference on eScience.

Biological Interactions and Dynamics Science Theme Advisory Panel (BID-STAP)

Ljiljana Paša-Tolić, Joel G. Pounds, Donald R. Baer, 2011 .

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

Richard D. Smith, Thomas O. Metz, Chengjun Li, 2013, BMC Systems Biology.

Multiscale Toxicology- Building the Next Generation Tools for Toxicology

Kevin R. Minard, Katrina M. Waters, Justin G. Teeguarden, 2012 .

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Christopher S. Oehmen, Bobbie-Jo M. Webb-Robertson, William R. Cannon, 2008, Bioinform..

NVBL (National Virtual Biotechnology Laboratory) Viral Fate and Transport for COVID-19

Katrina M. Waters, 2020 .

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis

Courtney Corley, Jason E. McDermott, Michael G. Katze, 2012, BMC Systems Biology.

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

Tao Liu, Simon Rogers, Mark A. Girolami, 2008, Bioinform..

Bayesian Posterior Integration for Classification of Mass Spectrometry Data

Qibin Zhang, Bobbie-Jo M. Webb-Robertson, Thomas O. Metz, 2017 .

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

Chengjun Li, Jason E. McDermott, Amie J. Eisfeld, 2011, BMC Systems Biology.

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies.

Joel G. Pounds, Bobbie-Jo M. Webb-Robertson, Thomas O. Metz, 2013, BioTechniques.

Host Regulatory Network Response to Infection with Highly Pathogenic H5N1 Avian Influenza Virus

Jean H. Chang, Amie J. Eisfeld, Gabriele Neumann, 2011, Journal of Virology.

Controlling the Response: Predictive Modeling of a Highly Central, Pathogen-Targeted Core Response Module in Macrophage Activation

Joshua N. Adkins, Jason E. McDermott, Katrina M. Waters, 2011, PloS one.

A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses

Thomas O. Metz, Jean H. Chang, Jason E. McDermott, 2013, PloS one.

A comprehensive collection of systems biology data characterizing the host response to viral infection

Qibin Zhang, Brian D. Aevermann, Brett E. Pickett, 2014, Scientific Data.

AHR2 Mutant Reveals Functional Diversity of Aryl Hydrocarbon Receptors in Zebrafish

Katrina M. Waters, William H. Bisson, Robert L. Tanguay, 2012, PloS one.

Three human cell types respond to multi-walled carbon nanotubes and titanium dioxide nanobelts with cell-specific transcriptomic and proteomic expression patterns

Frank A. Witzmann, Susan C. Tilton, Katrina M. Waters, 2014, Nanotoxicology.

Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-Based Proteomics Data

Joel G. Pounds, Lee Ann McCue, Bobbie-Jo M. Webb-Robertson, 2010, Journal of proteome research.

Mechanisms of Severe Acute Respiratory Syndrome Coronavirus-Induced Acute Lung Injury

Bobbie-Jo M. Webb-Robertson, Thomas O. Metz, Lisa E. Gralinski, 2013, mBio.

A Community-Based Approach to Developing a Mobile Device for Measuring Ambient Air Exposure, Location, and Respiratory Health.

Elena S. Peterson, Christopher Scaffidi, Katrina M. Waters, 2015, Environmental justice.

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections

Lisa M. Bramer, Jason E. McDermott, Hugh D. Mitchell, 2019, Front. Cell Dev. Biol..

Pathogenic Influenza Viruses and Coronaviruses Utilize Similar and Contrasting Approaches To Control Interferon-Stimulated Gene Responses

Thomas O. Metz, Jeffrey M. Weiss, Lisa E. Gralinski, 2014, mBio.

Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics

Qibin Zhang, Rui Zhao, Thomas O. Metz, 2010, PLoS pathogens.