Yuexu Jiang

发表

MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization

Duolin Wang, Fei He, Dong Xu, 2020, Nucleic Acids Res..

Proteomic and Bioinformatic Profiling of Transporters in Higher Plant Mitochondria

Dong Xu, J. Thelen, R. Rao, 2020, Biomolecules.

Silencing AXL by covalent siRNA-gelatin-antibody nanoconjugate inactivates mTOR/EMT pathway and stimulates p53 for TKI sensitization in NSCLC.

T. Joshi, R. Kannan, Soumavo Mukherjee, 2019, Nanomedicine : nanotechnology, biology, and medicine.

Link Prediction Based on Extended Local Path Gain in Protein-Protein Interaction Network

Liang Chen, Yan Wang, Yanchun Liang, 2019, Tehnicki vjesnik - Technical Gazette.

Essential protein identification based on essential protein-protein interaction prediction by integrated edge weights

Yan Wang, Enrico Blanzieri, Wei Pang, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Association between short-term nitrogen dioxide exposure and outpatient visits for anxiety: A time-series study in Xi'an, China

Meng-xue Zhao, Yuexu Jiang, Yue Hu, 2022, Atmospheric Environment.

Dose–response association between sugar- and artificially sweetened beverage consumption and the risk of metabolic syndrome: a meta-analysis of population-based epidemiological studies

Leilei Liu, Xiao Zhang, F. Hong, 2020, Public Health Nutrition.

Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization

T. Joshi, Rishabh Dev, Sidharth Sen, 2019, Scientific Reports.

Prostanoid receptors in hyperfiltration‐mediated glomerular injury: Novel agonists and antagonists reveal opposing roles for EP2 and EP4 receptors

Mark L. Johnson, J. Novak, T. Srivastava, 2022, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

BFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis.

Dong Xu, Yuexu Jiang, Juexin Wang, 2017, Journal of molecular biology.

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

Dong Xu, Hao Lin, Dong Wang, 2021, Nucleic acids research.

scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses

Dong Xu, H. Fu, Juexin Wang, 2021, Nature Communications.

scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses

Dong Xu, Qin Ma, Yuexu Jiang, 2020, Nature Communications.

A mouse model of prenatal exposure to Interleukin-6 to study the developmental origin of health and disease

T. Joshi, T. Srivastava, U. Alon, 2021, Scientific Reports.

Machine learning development environment for single-cell sequencing data analyses

Juexin Wang, Qin Ma, Anjun Ma, 2022, 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Single-cell biological network inference using a heterogeneous graph transformer

Juexin Wang, Duolin Wang, Anjun Ma, 2023, Nature Communications.

DeepMAPS: Single-cell biological network inference using heterogeneous graph transformer

Juexin Wang, Qin Ma, Zihai Li, 2021 .

Biological network inference from single-cell multi-omics data using heterogeneous graph transformer

Lingtao Su, Juexin Wang, Zihai Li, 2021, bioRxiv.

Single-cell RNA sequencing to characterize the response of pancreatic cancer to anti-PD-1 immunotherapy

Yue Huang, J. Kaifi, Jing Zhou, 2021, Translational oncology.

MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation

I. Møller, Duolin Wang, H. Eubel, 2020, Computational and structural biotechnology journal.

RDF Sketch Maps - Knowledge Complexity Reduction for Precision Medicine Analytics

Megha Verma, Duolin Wang, Yuexu Jiang, 2016, PSB.

Computational methods for protein localization prediction

Duolin Wang, Dong Xu, Yuexu Jiang, 2021, Computational and structural biotechnology journal.

Transcription Factor β-Catenin Plays a Key Role in Fluid Flow Shear Stress-Mediated Glomerular Injury in Solitary Kidney

Mark L. Johnson, T. Joshi, J. Novak, 2021, Cells.

Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit.

R. E. Sharp, Yen On Chan, T. Joshi, 2022, Physiologia plantarum.

Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization

T. Joshi, Rishabh Dev, Sidharth Sen, 2018, Scientific Reports.

Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response

G. Stacey, Dong Xu, P. Balint-Kurti, 2021, Plants.

Upregulated proteoglycan-related signaling pathways in fluid flow shear stress-treated podocytes.

T. Joshi, J. Novak, T. Srivastava, 2020, American journal of physiology. Renal physiology.

DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional

Dong Xu, Duolin Wang, Yuexu Jiang, 2018, PSB.

MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels

Duolin Wang, Dong Xu, Yuexu Jiang, 2023, Nucleic Acids Res..

Integrating Gene Expression Data and Pathway Knowledge for In Silico Hypothesis Generation with IMPRes

Trupti Joshi, Dong Xu, Duolin Wang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A dynamic programing approach to integrate gene expression data and network information for pathway model generation

Yanchun Liang, Trupti Joshi, Dong Xu, 2020, Bioinform..

S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure

Duolin Wang, Dong Xu, Yuexu Jiang, 2023, bioRxiv.

IRnet: Immunotherapy response prediction using pathway knowledge-informed graph neural network.

Duolin Wang, Yuexu Jiang, Manish Sridhar Immadi, 2024, Journal of advanced research.

Scaffold protein SH3BP2 signalosome is pivotal for immune activation in nephrotic syndrome

J. Hodgin, T. Srivastava, R. Rottapel, 2023, JCI insight.