Edward J. O'Brien

发表

Multi-omic data integration enables discovery of hidden biological regularities

Ali Ebrahim, Elizabeth Brunk, Justin Tan, 2016, Nature Communications.

Systems biology of the structural proteome

Zhen Zhang, Philip E. Bourne, Elizabeth Brunk, 2016, BMC Systems Biology.

Models of Discourse Comprehension

Edward J. O'Brien, Anne E. Cook, E. J. O'Brien, 2015 .

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Joshua A. Lerman, Adam M. Feist, 2014, BMC Systems Biology.

Fundamentals of inferencing during reading

Edward J. O'Brien, Anne E. Cook, E. J. O'Brien, 2017, Lang. Linguistics Compass.

Teaching & Learning Guide for: Fundamentals of inferencing during reading

Edward J. O'Brien, Wei Wei, Anne E. Cook, 2017, Lang. Linguistics Compass.

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Edward J. O'Brien, Bernhard O. Palsson, Zachary A. King, 2017, bioRxiv.

Passive activation and instantiation of inferences during reading

Edward J. O'Brien, Anne E. Cook, Jr Lorch, 2015 .

Personnel Management Students Manage Personnel.

Edward J. O'Brien, 2012 .

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments

Edward J. O'Brien, Bernhard O. Palsson, Jose Utrilla, 2016, PLoS Comput. Biol..

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data

Edward J. O'Brien, Jonathan M. Monk, James T. Yurkovich, 2015, Proceedings of the National Academy of Sciences.

Computing the functional proteome: recent progress and future prospects for genome-scale models.

Edward J. O'Brien, B. Palsson, 2015, Current opinion in biotechnology.

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

Edward J. O'Brien, Adam M. Feist, Ryan A. LaCroix, 2014, Applied and Environmental Microbiology.

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

Edward J. O'Brien, Roger L. Chang, B. Palsson, 2013, Molecular systems biology.

Using Genome-scale Models to Predict Biological Capabilities

Edward J. O'Brien, Jonathan M. Monk, B. Palsson, 2015, Cell.

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli

Edward J. O'Brien, B. Palsson, Donghyuk Kim, 2014, Nature Communications.

Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation

Edward J. O'Brien, B. Palsson, Laurence Yang, 2017, Proceedings of the National Academy of Sciences.

Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

Edward J. O'Brien, Adam M. Feist, Jonathan M. Monk, 2016, Cell systems.

Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome

Edward J. O'Brien, Jun Wang, B. Palsson, 2013, Nature Biotechnology.

Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution.

Ke Chen, Edward J. O'Brien, Adam M. Feist, 2016, Cell systems.

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli

Edward J. O'Brien, Donghyuk Kim, Richard Szubin, 2015, Nature Communications.

Global Rebalancing of Cel lular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution Graphical

Edward J. O'Brien, Adam M. Feist, B. Palsson, 2016 .

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

Edward J. O'Brien, Zachary A. King, B. Palsson, 2016, bioRxiv.

The genetic basis for adaptation of model-designed syntrophic co-cultures

Edward J. O'Brien, Adam M. Feist, Rob Knight, 2019, PLoS Comput. Biol..

A computational framework for genome-scale models of metabolism and gene expression.

Edward J. O'Brien, Zachary A. King, Joanne K. Liu, 2018 .

Model-driven design and evolution of non-trivial synthetic syntrophic pairs

Edward J. O'Brien, Adam M. Feist, Zachary A. King, 2018, bioRxiv.

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

Edward J. O'Brien, Adam M. Feist, Bernhard O Palsson, 2016, bioRxiv.

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Edward J. O'Brien, Adam M. Feist, Bernhard O. Palsson, 2018, bioRxiv.

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Edward J. O'Brien, Zachary A. King, Joanne K. Liu, 2018, PLoS Comput. Biol..

Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution.

Edward J. O'Brien, Adam M. Feist, D. McCloskey, 2016, Cell systems.

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

Edward J. O'Brien, Adam M. Feist, Ryan A. LaCroix, 2014, Applied and Environmental Microbiology.

Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution.

Edward J. O'Brien, Adam M. Feist, D. McCloskey, 2016, Cell systems.

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data

Edward J. O'Brien, Jonathan M. Monk, James T. Yurkovich, 2015, Proceedings of the National Academy of Sciences.

Multi-omic data integration enables discovery of hidden biological regularities

Edward J. O'Brien, Adam M. Feist, Anand V. Sastry, 2016, Nature Communications.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Adam M. Feist, Joanne K. Liu, 2014, BMC Systems Biology.

COBRAme: A Computational Framework for Genome-Scale Models of Metabolism and Gene Expression

Edward J. O'Brien, Bernhard O. Palsson, Zachary A. King, 2017, bioRxiv.

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

Edward J. O'Brien, Adam M. Feist, Zachary A. King, 2016, bioRxiv.

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments

Edward J. O'Brien, B. Palsson, J. Utrilla, 2016, PLoS Comput. Biol..