Richard Szubin

Multi-omic data integration enables discovery of hidden biological regularities

Ali Ebrahim, Elizabeth Brunk, Justin Tan, 2016, Nature Communications.

High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies

Richard Szubin, Bernhard O. Palsson, Jared T. Broddrick, 2020, Frontiers in Microbiology.

OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States

Richard Szubin, Adam M. Feist, Bernhard O Palsson, 2019, Molecular biology and evolution.

Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes.

Elizabeth Brunk, Richard Szubin, Adam M. Feist, 2018, Metabolic engineering.

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli

Edward J. O'Brien, Donghyuk Kim, Richard Szubin, 2015, Nature Communications.

Cellular responses to reactive oxygen species can be predicted on multiple biological scales from molecular mechanisms

Justin Tan, Donghyuk Kim, Richard Szubin, 2017 .

Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655.

Donghyuk Kim, Richard Szubin, Bernhard O. Palsson, 2015, Cell reports.

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System.

Elizabeth Brunk, Richard Szubin, Bernhard O Palsson, 2018, Metabolic engineering.