Joshua A. Lerman

Multi-omic data integration enables discovery of hidden biological regularities

Ali Ebrahim, Elizabeth Brunk, Justin Tan, 2016, Nature Communications.

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Joshua A. Lerman, Bernhard O. Palsson, Ali Ebrahim, 2013, BMC Systems Biology.

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

Philip Miller, Joshua A. Lerman, Bernhard O. Palsson, 2015, Nucleic Acids Res..

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Joshua A. Lerman, Adam M. Feist, 2014, BMC Systems Biology.

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92

Joshua A. Lerman, Bernhard O. Palsson, Joshua N. Adkins, 2011, BMC Systems Biology.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

Joshua A. Lerman, Adam M. Feist, Bernhard Ø. Palsson, 2013, Proceedings of the National Academy of Sciences.