Y. Sambongi

发表

Caenorhabditis elegans cDNA for a Menkes/Wilson disease gene homologue and its function in a yeast CCC2 gene deletion mutant.

T. Oka, M. Futai, H. Omote, 1997, Journal of biochemistry.

Analysis of functional domains of Wilson disease protein (ATP7B) in Saccharomyces cerevisiae

T. Sugiyama, N. Miura, M. Futai, 1998, FEBS letters.

Heterologous expression of Hydrogenobacter thermophilus cytochrome c-552 in the periplasm of Pseudomonas aeruginosa

Y. Igarashi, H. Arai, T. Kodama, 1998 .

Production of recombinant cytochrome c-551 in a Pseudomonas aeruginosa mutant strain

Y. Igarashi, H. Arai, T. Kodama, 1995 .

Further enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c552.

Shin Kawano, Hiroaki Sasaki, Shin-ichi Mikami, 2006, Biochemistry.

Correlation between the Stability and Redox Potential of Three Homologous Cytochromes c from Two Thermophiles and One Mesophile

Yasuhiko Yamamoto, H. Mita, Y. Sambongi, 2009, Bioscience, biotechnology, and biochemistry.

Why isn't 'standard' heme good enough for c-type and d1-type cytochromes?

N. Sinha, James W. A. Allen, S. Ferguson, 2005, Dalton transactions.

Stability of cytochromes c′ from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure

T. Maruno, Yuji Kobayashi, T. Ohkubo, 2019, Extremophiles.

Control of the redox potential of Pseudomonas aeruginosa cytochrome c551 through the Fe-Met coordination bond strength and pKa of a buried heme propionic acid side chain.

Yasuhiko Yamamoto, J. Hasegawa, H. Mita, 2005, Biochemistry.

The gamma-subunit rotation and torque generation in F1-ATPase from wild-type or uncoupled mutant Escherichia coli.

T. Yanagida, K. Saito, M. Futai, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Stabilization Mechanism of Cytochrome c 552 from a Moderately Thermophilic Bacterium, Hydrogenophilus thermoluteolus

S. Uchiyama, Yuji Kobayashi, Shota Nakamura, 2008, Bioscience, biotechnology and biochemistry.

Thermal Stability of Cytochrome c 5 of Pressure-Sensitive Shewanella livingstonensis

C. Kato, T. Kurihara, H. Tamegai, 2011, Bioscience, biotechnology, and biochemistry.

Differences in biochemical properties of two 5′-nucleotidases from deep- and shallow-sea Shewanella species under various harsh conditions

S. Wakai, H. Yagi, Y. Sambongi, 2019, Bioscience, biotechnology, and biochemistry.

Cloning, expression, crystallization and preliminary X-ray characterization of cytochrome c552 from a moderate thermophilic bacterium, Hydrogenophilus thermoluteolus.

S. Uchiyama, Yuji Kobayashi, J. Hasegawa, 2005, Acta crystallographica. Section F, Structural biology and crystallization communications.

Structural and functional insights into thermally stable cytochrome c0 from a thermophile

T. Maruno, Yuji Kobayashi, T. Ohkubo, 2022 .

High Thermal Stability and Unique Trimer Formation of Cytochrome c′ from Thermophilic Hydrogenophilus thermoluteolus

H. Inoue, M. Yamanaka, S. Wakai, 2013, Bioscience, biotechnology, and biochemistry.

Cytochrome c550 expression in Paracoccus denitrificans strongly depends on growth condition: identification of promoter region for cycA by transcription start analysis.

M. D. Page, S. Ferguson, R. Stoll, 1996, Microbiology.

Oxidative phosphorylation in a thermophilic, facultative chemoautotroph, Hydrogenophilus thermoluteolus, living prevalently in geothermal niches.

Kaori Watanabe, S. Wakai, Y. Sambongi, 2013, Environmental microbiology reports.

Long-term observation of fluorescence of free single molecules to explore protein-folding energy landscapes.

T. Komatsuzaki, K. Kamagata, Satoshi Takahashi, 2012, Journal of the American Chemical Society.

Biological nano motor, ATP synthase F(o)F(1): from catalysis to gammaepsilonc(10-12) subunit assembly rotation.

M. Futai, Y. Wada, Y. Sambongi, 2000, Biochimica et biophysica acta.

Pseudomonas aeruginosa cytochrome c551 denaturation by five systematic urea derivatives that differ in the alkyl chain length

N. Matubayasi, S. Wakai, Y. Sambongi, 2017, Bioscience, biotechnology, and biochemistry.

Effects of Cysteine Introduction into Three Homologous Cytochromes c

Y. Sambongi, Taku Takeda, T. Sonoyama, 2009, Bioscience, biotechnology, and biochemistry.

A novel water-soluble Hantzsch 1,4-dihydropyridine compound that functions in biological processes through NADH regeneration.

M. Futai, I. Ueda, Y. Sambongi, 2002, The Journal of organic chemistry.

Regulation and sequence of the structural gene for cytochrome C552 from Escherichia coli: not a hexahaem but a 50kDa tetrahaem nitrite reductase

S. Busby, L. Griffiths, J. Cole, 1993, Molecular microbiology.

Gamma-aminobutyric acid fermentation with date residue by a lactic acid bacterium, Lactobacillus brevis.

K. Funato, D. Yamane, Y. Sambongi, 2017, Journal of bioscience and bioengineering.

Transcriptome Analyses of Metabolic Enzymes in Thiosulfate- and Hydrogen-Grown Hydrogenobacter thermophilus Cells

M. Ishii, Y. Igarashi, H. Arai, 2012, Bioscience, biotechnology, and biochemistry.

Effects of heme on the thermal stability of mesophilic and thermophilic cytochromes c: comparison between experimental and theoretical results.

M. Kinoshita, Takashi Yoshidome, M. Yamanaka, 2011, The Journal of chemical physics.

Hyperstability and crystal structure of cytochrome c(555) from hyperthermophilic Aquifex aeolicus.

S. Uchiyama, D. Motooka, Yuji Kobayashi, 2009, Acta crystallographica. Section D, Biological crystallography.

Structural and functional insights into thermally stable cytochrome c′ from a thermophile

T. Maruno, Yuji Kobayashi, T. Ohkubo, 2017, Protein science : a publication of the Protein Society.

Cytochrome c from a thermophilic bacterium has provided insights into the mechanisms of protein maturation, folding, and stability.

Y. Igarashi, S. Uchiyama, Yuji Kobayashi, 2002, European journal of biochemistry.

Heterologous expression and biochemical comparison of two homologous SoxX proteins of endosymbiontic Candidatus Vesicomyosocius okutanii and free-living Hydrogenovibrio crunogenus from deep-sea vent environments.

Takao Yoshida, Y. Sambongi, T. Igawa, 2022, Protein expression and purification.

Thermal destabilization mechanism of cytochrome c' from psychrophilic Shewanella violacea.

S. Fujiyoshi, M. Yamanaka, S. Wakai, 2021, Bioscience, biotechnology, and biochemistry.

Commonly stabilized cytochromes c from deep-sea Shewanella and Pseudomonas

Y. Harada, C. Kato, M. Nishiyama, 2018, Bioscience, biotechnology, and biochemistry.

Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea

T. Maruno, Yuji Kobayashi, T. Ohkubo, 2016, Bioscience, biotechnology, and biochemistry.

Correlation between the optimal growth pressures of four Shewanella species and the stabilities of their cytochromes c5

C. Kato, S. Wakai, Y. Sambongi, 2014, Extremophiles.

Heterologous synthesis of cytochrome c′ by Escherichia coli is not dependent on the System I cytochrome c biogenesis machinery

H. Inoue, S. Wakai, Y. Sambongi, 2011, The FEBS journal.

Hydration analysis of Pseudomonas aeruginosa cytochrome c551 upon acid unfolding by dielectric relaxation spectroscopy.

T. Wazawa, Makoto Suzuki, T. Miyazaki, 2010, Biophysical chemistry.

Comparative Analysis of Highly Homologous Shewanella Cytochromes c 5 for Stability and Function

S. Uchiyama, H. Tamegai, S. Wakai, 2010, Bioscience, biotechnology, and biochemistry.

Stability enhancement of cytochrome c through heme deprotonation and mutations.

S. Uchiyama, Yuji Kobayashi, J. Hasegawa, 2009, Biophysical chemistry.

Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c5*

Yasuhiko Yamamoto, S. Uchiyama, K. Nakasone, 2007, Extremophiles.

Five Amino Acid Residues Responsible for the High Stability of Hydrogenobacter thermophilus Cytochrome c552

Yasuhiko Yamamoto, S. Uchiyama, Yuji Kobayashi, 2005, Journal of Biological Chemistry.

Unexpected Elevated Production of Aquifex aeolicus Cytochrome c 555 in Escherichia coli Cells Lacking Disulfide Oxidoreductases

M. Yamanaka, Y. Sambongi, S. Ichiki, 2005, Bioscience, biotechnology, and biochemistry.

Function of Thermostable Redox Proteins as Thermo-electric Energy Converters

Y. Sambongi, 2005 .

Effects of axial methionine coordination on the in-plane asymmetry of the heme electronic structure of cytochrome c

Yasuhiko Yamamoto, J. Hasegawa, H. Mita, 2004, JBIC Journal of Biological Inorganic Chemistry.

Thermodynamic characterization of variants of mesophilic cytochrome c and its thermophilic counterpart.

Y. Igarashi, S. Uchiyama, Yuji Kobayashi, 2002, Protein engineering.

Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.

T. Yamazaki, Y. Kyōgoku, Y. Igarashi, 1998, Biochemistry.

Contrasting routes of c-type cytochrome assembly in mitochondria, chloroplasts and bacteria.

M. D. Page, S. Ferguson, Y. Sambongi, 1998, Trends in biochemical sciences.

Mutants of Escherichia coli lacking disulphide oxdoreductases DsbA and DsbB cannot synthesise an exogenous monohaem c‐type cytochrome except in the presence of disulphide compounds

S. Ferguson, Y. Sambongi, 1996, FEBS letters.

Alteration of haem‐attachment and signal‐cleavage sites for Paracoccus denitrificans cytochrome c550 probes pathway of c‐type cytochrome biogenesis in Escherichia coli

S. Ferguson, R. Stoll, Y. Sambongi, 1996, Molecular microbiology.

Synthesis of holo Paracoccus denitrificans cytochrome c 550 requires targeting to the periplasm whereas that of holo Hydrogenobacter thermophilus cytochrome c 552 does not

S. Ferguson, Y. Sambongi, 1994, FEBS letters.

Rotation of a complex of the gamma subunit and c ring of Escherichia coli ATP synthase. The rotor and stator are interchangeable.

M. Futai, Y. Wada, M. Tanabe, 2001, The Journal of biological chemistry.

A Biological Molecular Motor, Proton-Translocating ATP Synthase: Multidisciplinary Approach for a Unique Membrane Enzyme

M. Futai, Y. Wada, I. Ueda, 2000, Journal of bioenergetics and biomembranes.

Mechanical rotation of the c subunit oligomer in ATP synthase (F0F1): direct observation.

T. Yanagida, M. Futai, Y. Wada, 1999, Science.

One fold, two functions: cytochrome P460 and cytochrome c′-β from the methanotroph Methylococcus capsulatus (Bath)† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc05210g

J. Paps, D. Svistunenko, C. Andrew, 2019, Chemical science.

Transcriptome analysis of Chironomus sulfurosus larvae living in acidic environments: Insights into molecular mechanisms for acid tolerance.

P. Tettey, H. Saito, K. Kawai, 2021, Journal of insect physiology.

Thiosulfate oxidation by a moderately thermophilic hydrogen-oxidizing bacterium, Hydrogenophilus thermoluteolus

H. Kuroda, Miyako Tanabe, Y. Sambongi, 2007, Archives of Microbiology.

Specific thiol compounds complement deficiency in c‐type cytochrome biogenesis in Escherichia coli carrying a mutation in a membrane‐bound disulphide isomerase‐like protein

S. Ferguson, Y. Sambongi, 1994, FEBS letters.

High stability of apo-cytochrome c’ from thermophilic Hydrogenophilus thermoluteolus

M. Yamanaka, S. Wakai, Y. Sambongi, 2014, Bioscience, biotechnology, and biochemistry.

Conferment of CO-Controlled Dimer–Monomer Transition Property to Thermostable Cytochromec′ by Mutation in the Subunit–Subunit Interface

S. Hirota, M. Yamanaka, S. Wakai, 2019, Bulletin of the Chemical Society of Japan.

The γ-subunit rotation and torque generation in F1-ATPase from wild-type or uncoupled mutant Escherichia coli

Kiwamu Saito, T. Yanagida, M. Futai, 1999 .

Constant Enthalpy Change Value during Pyrophosphate Hydrolysis within the Physiological Limits of NaCl*

S. Kidokoro, K. Nakasone, K. Masaki, 2013, The Journal of Biological Chemistry.

Extremophilic Enzymes Related to Energy Conversion

S. Wakai, Y. Sambongi, 2018 .

Pyrophosphate hydrolysis in the extremely halophilic archaeon Haloarcula japonica is catalyzed by a single enzyme with a broad ionic strength range

K. Nakasone, S. Wakai, Y. Sambongi, 2017, Extremophiles.

ATP synthase F(1) sector rotation. Defective torque generation in the beta subunit Ser-174 to Phe mutant and its suppression by second mutations.

K. Saito, M. Futai, Y. Wada, 2001, The Journal of biological chemistry.

Biological nano motor, ATP synthase FoF1: from catalysis to γϵc10–12 subunit assembly rotation

M. Futai, Y. Wada, Y. Sambongi, 2000 .

Synthase (H(+) ATPase): coupling between catalysis, mechanical work, and proton translocation.

M. Futai, Y. Wada, H. Omote, 2000, Biochimica et biophysica acta.

Selected Mutations in a Mesophilic Cytochrome cConfer the Stability of a Thermophilic Counterpart*

Y. Igarashi, S. Uchiyama, Yuji Kobayashi, 2000, The Journal of Biological Chemistry.

Thermal stability tuning without affecting gas-binding function of Thermochromatium tepidum cytochrome c'.

Satoru Kobayashi, Yuji Kobayashi, M. Yamanaka, 2021, Bioscience, biotechnology, and biochemistry.

Thermal stability of cytochrome c′ from mesophilic Shewanella amazonensis

Y. Sambongi, Y. Kato, S. Fujii, 2015, Bioscience, biotechnology, and biochemistry.

Stabilization of mesophilic Allochromatium vinosum cytochrome c′ through specific mutations modeled by a thermophilic homologue

T. Maruno, Yuji Kobayashi, M. Yamanaka, 2018, Bioscience, biotechnology, and biochemistry.

Influence of a Single Amide Group on the Redox Function of Pseudomonas aeruginosa Cytochrome c551

Yasuhiko Yamamoto, H. Mita, Y. Sambongi, 2006 .

Difference in NaCl tolerance of membrane-bound 5′-nucleotidases purified from deep-sea and brackish water Shewanella species

M. Yamanaka, S. Wakai, Y. Sambongi, 2017, Extremophiles.

Heme Is Not Required for Aquifex aeolicus Cytochrome c 555 Polypeptide Folding

Yasuhiko Yamamoto, M. Yamanaka, H. Mita, 2009, Bioscience, biotechnology, and biochemistry.

Identification of the copper chaperone, CUC‐1, in Caenorhabditis elegans: tissue specific co‐expression with the copper transporting ATPase, CUA‐1

N. Nakamura, T. Oka, M. Futai, 1998, FEBS letters.

Function of the TRY C-terminal region artificially fused with its homologous transcription factors inducing root hair differentiation in Arabidopsis.

R. Tominaga, Wakana Tanaka, Y. Sambongi, 2021, Bioscience, biotechnology, and biochemistry.

Caenorhabditis elegans senses protons through amphid chemosensory neurons: proton signals elicit avoidance behavior

T. Wakabayashi, M. Futai, Y. Wada, 2000, Neuroreport.

Sensing of cadmium and copper ions by externally exposed ADL, ASE, and ASH neurons elicits avoidance response in Caenorhabditis elegans.

M. Futai, Y. Wada, Y Liu, 1999, Neuroreport.

Conferment of folding ability to a naturally unfolded apocytochrome c through introduction of hydrophobic amino acid residues.

M. Yamanaka, Y. Sambongi, M. Masanari, 2011, Biochemistry.

Evidence that single missense mutations in the Atp7a gene of two mouse models for Menkes' disease are responsible for impaired copper transport

M. Nishikimi, M. Futai, Y. Sambongi, 2000 .

Characterization of Non-Native Heme Coordination Structures Emerging upon Guanidine Hydrochloric Acid-Induced Unfolding of Pseudomonas aeruginosa Ferricytochrome c551

H. Tai, Yasuhiko Yamamoto, S. Nagatomo, 2005 .

Hydration-state change of horse heart cytochrome c corresponding to trifluoroacetic-acid-induced unfolding.

Satoshi Takahashi, T. Wazawa, Makoto Suzuki, 2013, Biophysical journal.

Influence of amino acid side chain packing on Fe-methionine coordination in thermostable cytochrome C.

Y. Igarashi, Yasuhiko Yamamoto, S. Uchiyama, 2002, Journal of the American Chemical Society.

Stabilization of Pseudomonas aeruginosa Cytochromec 551 by Systematic Amino Acid Substitutions Based on the Structure of Thermophilic Hydrogenobacter thermophilus Cytochrome c 552 *

M. Ishii, Y. Igarashi, S. Uchiyama, 1999, The Journal of Biological Chemistry.

Corrosion Test Using Bottom Water from Oil-storage Tank and Microbial Community Analysis by Next Generation Sequencer

K. Miyanaga, Y. Tanji, S. Wakai, 2015 .

Corrosion Test Using Bottom Water from Oil-storage Tank and Change of Microbial Community

S. Wakai, Y. Sambongi, S. Fujii, 2013 .

Structure of cytochrome c552 from a moderate thermophilic bacterium, Hydrogenophilus thermoluteolus: comparative study on the thermostability of cytochrome c.

S. Uchiyama, Yuji Kobayashi, J. Hasegawa, 2006, Biochemistry.

Complete thermal-unfolding profiles of oxidized and reduced cytochromes C.

Yasuhiko Yamamoto, S. Uchiyama, Yuji Kobayashi, 2004, Journal of the American Chemical Society.

Thermostability of Pseudomonas hydrogenothermophila cytochrome c-552.

Y. Igarashi, T. Kodama, S. Chung, 1992, Bioscience, biotechnology, and biochemistry.

Regulation of Cytochrome c- and Quinol Oxidases, and Piezotolerance of Their Activities in the Deep-Sea Piezophile Shewanella violacea DSS12 in Response to Growth Conditions

C. Kato, J. Kawamoto, T. Kurihara, 2013, Bioscience, biotechnology, and biochemistry.

Piezotolerance of the Respiratory Terminal Oxidase Activity of the Piezophilic Shewanella violacea DSS12 as Compared with Non-Piezophilic Shewanella Species

C. Kato, Y. Nogi, J. Kawamoto, 2011, Bioscience, biotechnology, and biochemistry.

Stability of cytochromes c′ from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure

T. Maruno, Yuji Kobayashi, T. Ohkubo, 2019, Extremophiles.

Effects of heme on the thermal stability of mesophilic and thermophilic cytochromes c: comparison between experimental and theoretical results.

M. Kinoshita, Takashi Yoshidome, M. Yamanaka, 2011, The Journal of chemical physics.

Contribution of a surface salt bridge to the protein stability of deep-sea Shewanella benthica cytochrome c'.

K. Kawahara, Y. Sambongi, H. Oki, 2023, Journal of Structural Biology.

Crystal structure of thermally stable homodimeric cytochrome c'-β from Thermus thermophilus.

T. Ohkubo, K. Kawahara, M. Hough, 2022, Acta crystallographica. Section F, Structural biology communications.

Correlation between the optimal growth pressures of four Shewanella species and the stabilities of their cytochromes c5

C. Kato, S. Wakai, Y. Sambongi, 2014, Extremophiles.

Unexpectedly high thermostability of an NADP-dependent malic enzyme from a psychrophilic bacterium, Shewanella livingstonensis Ac10.

Akiko Hida, T. Tajima, J. Kato, 2021, Journal of bioscience and bioengineering.