D. Bibby

发表

Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing

M. Zuckerman, J. Mbisa, David W. G. Brown, 2020, Frontiers in Microbiology.

Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya

P. Cane, J. Berkley, E. Sanders, 2019, PloS one.

Persistence of HIV-1 Transmitted Drug Resistance Mutations

D. Webster, D. Pillay, Mark Hopkins, 2013, The Journal of infectious diseases.

Comparison of next Generation Sequencing Technologies for the Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes

P. Klenerman, P. Simmonds, D. Bonsall, 2016 .

First Reported Outbreak of Diarrhea Due to Adenovirus Infection in a Hematology Unit for Adults

J. Tang, R. Tedder, K. Peggs, 2005, Journal of Clinical Microbiology.

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Darren L. Smith, Evelien M. Adriaenssens, Gemma L. Kay, 2020, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway

R. Bowden, Camilla L. C. Ip, R. Myers, 2020, Frontiers in Microbiology.

Clinical evaluation of a hepatitis C virus whole-genome sequencing pipeline for genotyping and resistance testing.

J. Ledesma, J. Mbisa, Renata Piorkowska, 2021, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

A European multi-centre External Quality Assessment (EQA) study on phenotypic and genotypic methods used for Herpes Simplex Virus (HSV) drug resistance testing.

D. Boutolleau, S. Burrel, E. Frobert, 2017, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

Joshua B. Singer, Darren L. Smith, Shane A. McCarthy, 2021, The Lancet Infectious Diseases.

A MIQE-Compliant Real-Time PCR Assay for Aspergillus Detection

S. Bustin, D. Bibby, G. Johnson, 2012, PloS one.

Comparative evaluation of the seegene seeplex RV15 and real‐time PCR for respiratory virus detection

J. Breuer, D. Bibby, I. McElarney, 2011, Journal of medical virology.

The role of TLR2 and 4 in Behçet's disease pathogenesis

L. Bergmeier, F. Fortune, M. Curtis, 2014, Innate immunity.

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

Molecular Investigations of an Outbreak of Parainfluenza Virus Type 3 and Respiratory Syncytial Virus Infections in a Hematology Unit

R. Tedder, S. Mackinnon, N. Brink, 2007, Journal of Clinical Microbiology.

Molecular epidemiology of genital human papillomavirus and Chlamydia trachomatis among patients attending a genitourinary medicine clinic – will vaccines protect?

C. Carne, H. Jalal, D. Bibby, 2007, International journal of STD & AIDS.

Sustained immunological responses to highly active antiretroviral therapy at 36 months in a Ghanaian HIV cohort.

D. Chadwick, G. Bedu-Addo, D. Bibby, 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant

Graham W. Taylor, Joshua B. Singer, Darren L. Smith, 2021, Science.

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

D. A. Jackson, Graham W. Taylor, William L. Hamilton, 2020, Cell.

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

Graham W. Taylor, Joshua B. Singer, Scott M Elliott, 2021, Nature.

Interpreting Viral Deep Sequencing Data with GLUE

David Smith, Joseph Hughes, David L Robertson, 2019, Viruses.

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

William T. Harvey, Graham W. Taylor, William L. Hamilton, 2021, Cell Reports.

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2022, Scientific Reports.

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Graham W. Taylor, Scott M Elliott, Jaime M. Tovar-Corona, 2022, Nature Communications.

Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples

J. Mbisa, C. Manso, D. Bibby, 2017, Scientific Reports.

Disease Progression in HIV-1–Infected Viremic Controllers

C. Orkin, Á. McKnight, A. Stagg, 2012, Journal of acquired immune deficiency syndromes.

Genomic reconstruction of the SARS-CoV-2 epidemic in England

William T. Harvey, William L. Hamilton, Richard J. Goater, 2021, Nature.

Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy

Joshua B. Singer, E. Barnes, J. Benselin, 2021, Journal of viral hepatitis.

Real World SOF/VEL/VOX Retreatment Outcomes and Viral Resistance Analysis for HCV Patients with Prior Failure to DAAs

E. Barnes, J. Benselin, J. McLauchlan, 2020, medRxiv.

Determining the Origins of Human Immunodeficiency Virus Type 1 Drug-resistant Minority Variants in People Who Are Recently Infected Using Phylogenetic Reconstruction

C. Fraser, E. Volz, D. Pillay, 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes

Paolo Piazza, Emma Hudson, John McLauchlan, 2016, Journal of Clinical Microbiology.

Nosocomial transmission of parainfluenza 3 virus in hematological patients characterized by molecular epidemiology

A. Rohatiner, I. Ushiro-Lumb, D. Bibby, 2011, Transplant infectious disease : an official journal of the Transplantation Society.

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping

Emma R Lee, Mark Howison, Shuntai Zhou, 2020, Viruses.

Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK

Ross J. Harris, N. Field, R. Myers, 2017, The Journal of antimicrobial chemotherapy.

Inadvertent non-nucleoside reverse transcriptase inhibitor (NNRTI)-based antiretroviral therapy in dual HIV-1/2 and HIV-2 seropositive West Africans: a retrospective study.

F. Sarfo, M. Dittmar, R. Phillips, 2009, The Journal of antimicrobial chemotherapy.

The seroprevalence and salivary shedding of herpesviruses in Behçet's syndrome and recurrent aphthous stomatitis

L. Bergmeier, F. Fortune, E. Hagi-Pavli, 2015, Journal of oral microbiology.

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2023, Journal of Hospital Infection.

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

Surveillance of HIV-1 transmitted integrase strand transfer inhibitor resistance in the UK

J. Ledesma, D. Dunn, A. Geretti, 2020, The Journal of antimicrobial chemotherapy.

Enhanced surveillance of human immunodeficiency virus type 1 drug 2 resistance in recently infected MSM in the UK 3 4

Nigel, Ross J. Harris, R. Myers, 2016 .

Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Application of a novel in vitro selection technique to isolate and characterise high affinity DNA aptamers binding mammalian prion proteins.

J. Garson, L. Kirby, D. Bibby, 2008, Journal of virological methods.

Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples

J. Mbisa, C. Manso, D. Bibby, 2017, Scientific Reports.

The emergence of drug resistant HIV variants at virological failure of HAART combinations containing efavirenz, tenofovir and lamivudine or emtricitabine within the UK Collaborative HIV Cohort.

C. Sabin, M. Nelson, D. Dunn, 2014, The Journal of infection.

Low frequency of genotypic resistance in HIV-1-infected patients failing an atazanavir-containing regimen: a clinical cohort study

B. Gazzard, D. Webster, C. Leen, 2013, The Journal of antimicrobial chemotherapy.

of Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity

D. A. Jackson, Graham W. Taylor, William L. Hamilton, 2021 .

Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

Joshua B. Singer, David A. Drew, Scott M Elliott, 2021, The Lancet. Public health.

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

Scott M Elliott, Kevin R. Cole, Robert M. Davies, 2022, Scientific Reports.

Increased reports of severe myocarditis associated with enterovirus infection in neonates, United Kingdom, 27 June 2022 to 26 April 2023

S. Ladhani, A. Singanayagam, J. Stowe, 2023, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.