B. Verhaegen

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Detection and isolation of human pathogenic non-O157 Shiga toxin-producing Escherichia coli (STEC) in food : a needle in a haystack

B. Verhaegen, 2016 .

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Microorganisms.

Comparison of Droplet Digital PCR and qPCR for the Quantification of Shiga Toxin-Producing Escherichia coli in Bovine Feces

E. van Coillie, M. Heyndrickx, L. De Zutter, 2016, Toxins.

Development and Evaluation of a Multiplex SARS-CoV-2 RT-ddPCR, Applicable to Respiratory and Wastewater Samples

A. Cay, Marie-Alice Fraiture, P. Herman, 2021 .

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, International journal of molecular sciences.

Methods to assess the effect of meat processing on viability of Toxoplasma gondii: towards replacement of mouse bioassay by in vitro testing.

P. Hengeveld, J. van der Giessen, G. Schares, 2020, International journal for parasitology.

Growth of Stressed Strains of Four Non-O157 Shiga Toxin-Producing Escherichia coli Serogroups in Five Enrichment Broths.

M. Heyndrickx, L. De Zutter, K. De Reu, 2015, Journal of food protection.

Comparison of Six Chromogenic Agar Media for the Isolation of a Broad Variety of Non-O157 Shigatoxin-Producing Escherichia coli (STEC) Serogroups

M. Heyndrickx, L. De Zutter, K. De Reu, 2015, International journal of environmental research and public health.

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015.

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, International journal of food microbiology.

Genetic diversity of Shiga toxin-producing Escherichia coli O157 : H7 recovered from human and food sources.

M. Heyndrickx, W. Elkhatib, D. Piérard, 2015, Microbiology.

SARS-CoV-2 Infection in Captive Hippos (Hippopotamus amphibius), Belgium

H. Leirs, J. V. D. van den Brand, K. Chiers, 2023, Animals : an open access journal from MDPI.

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Scientific Reports.

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial genomics.

Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial Genomics.

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

SARS-CoV-2 Surveillance in Belgian Wastewaters

C. Linard, L. Lahousse, K. Dierick, 2022, Viruses.

Evaluation of detection methods for non-O157 Shiga toxin-producing Escherichia coli from food.

Inge Van Damme, Mohamed Elhadidy, K. Dierick, 2016, International journal of food microbiology.

QuilA-Adjuvanted T. gondii Lysate Antigens Trigger Robust Antibody and IFNγ+ T Cell Responses in Pigs Leading to Reduction in Parasite DNA in Tissues Upon Challenge Infection

P. Dorny, K. Dierick, E. Cox, 2019, Front. Immunol..

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2022, Foods.

Evaluation of a new chromogenic medium for direct enumeration of Campylobacter in poultry meat samples.

M. Uyttendaele, L. De Zutter, J. Baré, 2014, Journal of food protection.

Pork as a source of transmission of Toxoplasma gondii to humans: a parasite burden study in pig tissues after infection with different strains of Toxoplasma gondii as a function of time and different parasite stages.

P. Dorny, K. Dierick, W. Coucke, 2018, International journal for parasitology.

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution

A. Cay, S. D. De Keersmaecker, Marie-Alice Fraiture, 2021, Current issues in molecular biology.

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Foods.

Development of a Droplet Digital PCR to Monitor SARS-CoV-2 Omicron Variant BA.2 in Wastewater Samples

P. Herman, N. Roosens, B. Verhaegen, 2023, Microorganisms.

Molecular Study of Toxoplasma gondii Isolates Originating from Humans and Organic Pigs in Belgium.

J. Murat, P. Dorny, K. Dierick, 2020, Foodborne pathogens and disease.

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2023, Frontiers in microbiology.

Development of a reverse transcriptase digital droplet polymerase chain reaction‐based approach for SARS‐CoV‐2 variant surveillance in wastewater

S. D. De Keersmaecker, Marie-Alice Fraiture, N. Roosens, 2024, Water environment research : a research publication of the Water Environment Federation.