A. Tokmakov

发表

Comparative homology modeling of pyruvate dehydrogenase kinase isozymes from Xenopus tropicalis reveals structural basis for their subfunctionalization

A. Tokmakov, 2012, Journal of Molecular Modeling.

Coupled transcription-and-translation in Xenopus oocyte and egg extracts.

S. Yokoyama, M. Shirouzu, A. Tokmakov, 2006, Journal of biotechnology.

Analysis and Optimization of Cell-Free Protein Synthesis

S. Yokoyama, M. Shirouzu, A. Kurotani, 2018 .

Content of intrinsic disorder influences the outcome of cell-free protein synthesis

T. Sakurai, S. Yokoyama, M. Shirouzu, 2015, Scientific Reports.

Bioinformatics analysis and optimization of cell-free protein synthesis.

S. Yokoyama, M. Shirouzu, A. Kurotani, 2014, Methods in molecular biology.

Identification of multiple physicochemical and structural properties associated with soluble expression of eukaryotic proteins in cell-free bacterial extracts

A. Tokmakov, 2014, Front. Microbiol..

Multiple Post-translational Modifications Affect Heterologous Protein Synthesis*

S. Yokoyama, M. Shirouzu, A. Kurotani, 2012, The Journal of Biological Chemistry.

Activation of T7 RNA polymerase in Xenopus oocytes and cell‐free extracts

Y. Fukami, A. Tokmakov, 2010, Genes to cells : devoted to molecular & cellular mechanisms.

Activity and intracellular localization of senescence-associated β-galactosidase in aging Xenopus oocytes and eggs

A. Tokmakov, Ken-Ichi Sato, 2019, Experimental Gerontology.

Modulation of Intracellular ROS and Senescence-Associated Phenotypes of Xenopus Oocytes and Eggs by Selective Antioxidants

A. Tokmakov, Ken-Ichi Sato, 2021, Antioxidants.

Low density detergent-insoluble membrane of Xenopus eggs: subcellular microdomain for tyrosine kinase signaling in fertilization.

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2002, Development.

Evidence for the involvement of a Src-related tyrosine kinase in Xenopus egg activation.

T. Fujimura, Y. Fukami, A. Tokmakov, 1999, Developmental biology.

Purification and Characterization of a Src-related p57 Protein-tyrosine Kinase from Xenopus Oocytes

Y. Fukami, M. Aoto, A. Tokmakov, 1996, The Journal of Biological Chemistry.

Involvement of protein‐tyrosine phosphorylation and dephosphorylation in sperm‐induced Xenopus egg activation

Y. Fukami, M. Aoto, A. Tokmakov, 1998, FEBS letters.

c-Src and phosphatidylinositol 3-kinase are involved in NGF-dependent tyrosine phosphorylation of Shc in PC12 cells.

M. Kakumoto, Y. Fukami, A. Tokmakov, 1998, Biochemical and biophysical research communications.

Phosphatidylinositol 4,5‐bisphosphate stimulates phosphorylation of the adaptor protein Shc by c‐Src

F. Hayashi, Y. Fukami, H. Yamamoto, 1997, FEBS letters.

Monitoring gene expression in a single Xenopus oocyte using multiple cytoplasmic collections and quantitative RT‐PCR

T. Hashimoto, Y. Fukami, A. Tokmakov, 2014, The FEBS journal.

Reprogramming of somatic cells and nuclei by Xenopus oocyte and egg extracts.

S. Kamada, A. Tokmakov, Ken-Ichi Sato, 2016, The International journal of developmental biology.

Comprehensive bioinformatics analysis of cell‐free protein synthesis: identification of multiple protein properties that correlate with successful expression

S. Yokoyama, M. Shirouzu, A. Kurotani, 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Hydrogen peroxide induces Src family tyrosine kinase‐dependent activation of Xenopus eggs

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2001, Development, growth & differentiation.

Deregulation of mitogen-activated protein kinase at low pH due to a structural rearrangement of activation segment.

Y. Fukami, A. Tokmakov, K. Sato, 2000, Biochimica et biophysica acta.

Evidence that phosphatidylinositol 3-kinase is involved in sperm-induced tyrosine kinase signaling in Xenopus egg fertilization

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2009, BMC Developmental Biology.

In Vitro Reconstruction of Xenopus Oocyte Ovulation

A. Tokmakov, Ken-Ichi Sato, Y. Matsumoto, 2019, International journal of molecular sciences.

Reconstitution of Src-dependent Phospholipase Cγ Phosphorylation and Transient Calcium Release by Using Membrane Rafts and Cell-free Extracts from Xenopus Eggs*

S. Yokoyama, M. Shirouzu, M. Kurokawa, 2003, Journal of Biological Chemistry.

Biochemical evidence for the interaction of regulatory subunit of cAMP‐dependent protein kinase with IDA (Inter‐DFG‐APE) region of catalytic subunit

H. Kaise, Y. Fukami, M. Aoto, 1996, FEBS letters.

Coupled cytoplasmic transcription-and-translation--a method of choice for heterologous gene expression in Xenopus oocytes.

S. Yokoyama, M. Shirouzu, A. Tokmakov, 2006, Journal of biotechnology.

Src kinase induces calcium release in Xenopus egg extracts via PLCgamma and IP3-dependent mechanism.

Y. Fukami, A. Tokmakov, T. Iwasaki, 2002, Cell calcium.

Molecular cloning and expression analysis of PDK family genes in Xenopus laevis reveal oocyte-specific PDK isoform.

S. Yokoyama, M. Shirouzu, A. Tokmakov, 2005, Biochemical and biophysical research communications.

Tyrosine residues 239 and 240 of Shc are phosphatidylinositol 4,5-bisphosphate-dependent phosphorylation sites by c-Src.

M. Shibuya, N. Gotoh, M. Kakumoto, 1997, Biochemical and biophysical research communications.

Tyrosine kinase-dependent activation of phospholipase Cgamma is required for calcium transient in Xenopus egg fertilization.

Y. Fukami, A. Tokmakov, T. Iwasaki, 2000, Developmental biology.

Regulation of Src kinase activity during Xenopus oocyte maturation.

S. Yokoyama, M. Shirouzu, S. Itakura, 2005, Developmental biology.

Global decay of mRNA is a hallmark of apoptosis in aging Xenopus eggs

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2017, RNA biology.

Kobe University Repository : Kernel タイトル Tit le Unlaid Xenopus eggs degrade by apoptosis in the genital t ract 著者

Y. Fukami, A. Tokmakov, T. Iwasaki, 2019 .

Unlaid Xenopus eggs degrade by apoptosis in the genital tract

Y. Fukami, A. Tokmakov, T. Iwasaki, 2013, BMC Cell Biology.

Unfertilized frog eggs die by apoptosis following meiotic exit

Y. Fukami, A. Tokmakov, T. Iwasaki, 2011, BMC Cell Biology.

Studying Fertilization in Cell-Free Extracts

K. Yoshino, K. Yonezawa, Y. Fukami, 2006 .

Toward the understanding of biology of oocyte life cycle in Xenopus Laevis: No oocytes left behind

A. Tokmakov, Ken-Ichi Sato, 2020, Reproductive medicine and biology.

Peptide inhibitors of the mitogen-activated protein kinase pathway: a structure -mimetic peptide corresponding to the conserved inter-DFG-APE region in the kinase domain.

Y. Fukami, A. Tokmakov, K. Sato, 1999, Pharmacology & therapeutics.

Inhibition of MAPK pathway by a synthetic peptide corresponding to the activation segment of MAPK.

Y. Fukami, A. Tokmakov, K. Sato, 1998, Biochemical and biophysical research communications.

Fertilization signalling and protein-tyrosine kinases.

Y. Fukami, A. Tokmakov, K. Sato, 2000, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

Adaptor protein Shc undergoes translocation and mediates up‐regulation of the tyrosine kinase c‐Src in EGF‐stimulated A431 cells

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2000, Genes to cells : devoted to molecular & cellular mechanisms.

Calcium Signaling and Meiotic Exit at Fertilization in Xenopus Egg

V. Stefanov, Y. Fukami, A. Tokmakov, 2014, International journal of molecular sciences.

Studying fertilization in cell-free extracts: focusing on membrane/lipid raft functions and proteomics.

K. Yoshino, K. Yonezawa, Y. Fukami, 2006, Methods in molecular biology.

Dissection of the Ovulatory Process Using ex vivo Approaches

V. Stefanov, A. Tokmakov, Ken-Ichi Sato, 2020, Frontiers in Cell and Developmental Biology.

Postovulatory cell death: why eggs die via apoptosis in biological species with external fertilization

V. Stefanov, A. Tokmakov, Ken-Ichi Sato, 2017, The Journal of reproduction and development.

Oxidative Stress-Induced Overactivation of Frog Eggs Triggers Calcium-Dependent Non-Apoptotic Cell Death

A. Tokmakov, Ken-Ichi Sato, Yudai Morichika, 2022, Antioxidants.

Protein pI and Intracellular Localization

A. Kurotani, A. Tokmakov, Ken-Ichi Sato, 2021, Frontiers in Molecular Biosciences.

Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

T. Sakurai, A. Kurotani, Yutaka Yamada, 2019, BMC Molecular and Cell Biology.

Correlations between predicted protein disorder and post-translational modifications in plants

Tetsuya Sakurai, Yutaka Kuroda, Kazuo Shinozaki, 2014, Bioinform..

Comparative expression analysis of multiple PDK genes in Xenopus laevis during oogenesis, maturation, fertilization, and early embryogenesis.

S. Yokoyama, M. Shirouzu, Y. Fukami, 2009, Gene expression patterns : GEP.

Phylogeny of vertebrate Src tyrosine kinases revealed by the epitope region of mAb327.

K. Kosuge, K. Yoshino, K. Yonezawa, 2006, Journal of biochemistry.

Phosphoregulatory tyrosine of Xenopus mitogen-activated protein kinase is out of the reach of the enzyme catalytic center after autophosphorylation. Biochemical evidence for conformational changes upon phosphorylation.

E. Nishida, Y. Fukami, A. Tokmakov, 1996, European journal of biochemistry.

Adaptor Protein Shc Is an Isoform-specific Direct Activator of the Tyrosine Kinase c-Src*

Yasuo Fukami, M. Kakumoto, Ken-ichi Sato, 2002, The Journal of Biological Chemistry.

Autophosphorylation of MAP kinase disables the MAPK pathway in apoptotic Xenopus eggs.

V. Stefanov, A. Tokmakov, Ken-Ichi Sato, 2019, Biochemical and biophysical research communications.

Phosphorylation-sensitive secondary structure in a synthetic peptide corresponding to the activation loop of MAP kinase.

Y. Fukami, A. Tokmakov, K. Sato, 1997, Biochemical and biophysical research communications.

Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

T. Sakurai, A. Kurotani, Yutaka Yamada, 2019, BMC Molecular and Cell Biology.

Analysis of signal transduction in cell-free extracts and rafts of Xenopus eggs.

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2010, Methods.

Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4.

S. Yokoyama, T. Terada, M. Shirouzu, 2008, Acta crystallographica. Section D, Biological crystallography.

Membrane Microdomains as Platform to Study Membrane-Associated Events During Oogenesis, Meiotic Maturation, and Fertilization in Xenopus laevis.

A. Tokmakov, Ken-Ichi Sato, 2019, Methods in molecular biology.

Biochemical Hallmarks of Oxidative Stress-Induced Overactivation of Xenopus Eggs

A. Tokmakov, Ken-Ichi Sato, Misaki Awamura, 2019, BioMed research international.

Reconstitution of Intracellular Calcium Signaling in Xenopus Egg Extracts.

A. Tokmakov, Ken-Ichi Sato, 2019, Methods in molecular biology.

A 58-kDa Shc protein is present in Xenopus eggs and is phosphorylated on tyrosine residues upon egg activation.

Y. Fukami, M. Aoto, A. Tokmakov, 1999, Biochemical and biophysical research communications.

Organization of the multiaminoacyl‐tRNA synthetase complex and the cotranslational protein folding

I. Kurochkin, Zejun Zheng, I. Berezovsky, 2015, Protein science : a publication of the Protein Society.

[The effect of serotonin on the functional activity of monocytes].

O. Koshkina, A. Tokmakov, V. I. Vasil’ev, 1991, Tsitologiia.

Bioinformatics analysis and optimization of cell-free protein synthesis.

S. Yokoyama, M. Shirouzu, A. Kurotani, 2014, Methods in molecular biology.

Calcium oscillations in Xenopus egg cycling extracts

Y. Fukami, A. Tokmakov, Ken-Ichi Sato, 2001, Journal of cellular biochemistry.

Electrostatic Switch Function in the Mechanism of Protein Kinase A Iα Activation: Results of the Molecular Dynamics Simulation

O. Rogacheva, E. Vershinina, A. Tokmakov, 2017, BioMed research international.

Spontaneous Overactivation of Xenopus Frog Eggs Triggers Necrotic Cell Death

A. Tokmakov, Ryuga Teranishi, Ken-ichi Sato, 2024, International journal of molecular sciences.

Organization of the multiaminoacyl‐tRNA synthetase complex and the cotranslational protein folding

I. Kurochkin, Zejun Zheng, I. Berezovsky, 2015, Protein science : a publication of the Protein Society.