Jijun Tang

发表

Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes

Krister M. Swenson, William Arndt, Jijun Tang, 2008, APBC.

Exemplar or matching: modeling DCJ problems with unequal content genome data

David A. Bader, Jijun Tang, Zhaoming Yin, 2015, Journal of Combinatorial Optimization.

Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions

Jun Zhou, Jijun Tang, Fei Hu, 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes

Yu Lin, Jijun Tang, Bernard M. E. Moret, 2012, Pacific Symposium on Biocomputing.

A Heuristic for Phylogenetic Reconstruction Using Transposition

Meng Zhang, Jijun Tang, Feng Yue, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Predicting protein-protein interactions via multivariate mutual information of protein sequences

Jijun Tang, Fei Guo, Yijie Ding, 2016, BMC Bioinformatics.

Using jackknife to assess the quality of gene order phylogenies

Jian Shi, Jijun Tang, Yiwei Zhang, 2010, BMC Bioinformatics.

Improving Inversion Median Computation Using Commuting Reversals and Cycle Information

William Arndt, Jijun Tang, Jijun Tang, 2007, RECOMB-CG.

Assessing ancestral genome reconstruction methods by resampling

Jun Zhou, Jijun Tang, Fei Hu, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data

Tao Liu, Jijun Tang, Bernard M. E. Moret, 2002, WABI.

Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution

Jijun Tang, Fei Guo, Gaofeng Pan, 2017, Scientific Reports.

A mixture framework for inferring ancestral gene orders

Jijun Tang, Fei Hu, Yiwei Zhang, 2012, BMC Genomics.

Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier

Jijun Tang, Yijie Ding, Fei Guo, 2017, J. Chem. Inf. Model..

Identification of DNA–protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information

Jian Song, Jijun Tang, Fei Guo, 2017, Molecules.

Maximum Parsimony Analysis of Gene Copy Number Changes

Jun Zhou, Yu Lin, Jijun Tang, 2015, WABI.

Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements

Jijun Tang, Bernard M. E. Moret, 2005, CPM.

The simulation and data visualization potential of Microsoft's XNA

Roger A. Dougal, Jijun Tang, Jeremiah J. Shepherd, 2010 .

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only

Jijun Tang, Quan Zou, Leyi Wei, 2017, IEEE Transactions on NanoBioscience.

Multi-pattern Matching with Wildcards

Meng Zhang, Jijun Tang, Yi Zhang, 2011, J. Softw..

Improved detection of DNA-binding proteins via compression technology on PSSM information

Jijun Tang, Fei Guo, Yijie Ding, 2017, PloS one.

An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number

Jun Zhou, Yu Lin, Jijun Tang, 2015, ISBRA.

Analysis of gene copy number changes in tumor phylogenetics

Jun Zhou, Yu Lin, Jijun Tang, 2016, Algorithms for Molecular Biology.

Improving simulation performance with gpus

Jijun Tang, Jian Shi, 2011 .

Guest Editorial for the 14th Asia Pacific Bioinformatics Conference

Lu Tian, Jijun Tang, Yi-Ping Phoebe Chen, 2018, IEEE ACM Trans. Comput. Biol. Bioinform..

Large-scale phylogenetic reconstruction from arbitrary gene-order data

Jijun Tang, Bernard M. E. Moret, 2004 .

The computational models of drug-target interaction prediction.

Jijun Tang, Fei Guo, Yijie Ding, 2019, Protein and peptide letters.

A Novel Computational Method for Detecting DNA Methylation Sites with DNA Sequence Information and Physicochemical Properties

Jijun Tang, Fei Guo, Limin Jiang, 2018, International journal of molecular sciences.

Quartet-Based Phylogeny Reconstruction from Gene Orders

Tao Liu, Jijun Tang, Bernard M. E. Moret, 2005, COCOON.

Improving genome rearrangement phylogeny using sequence-style parsimony

Jijun Tang, Li-San Wang, Li-San Wang, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents

David A. Bader, Jijun Tang, Zhaoming Yin, 2014, COCOON.

Three Sequence Alignment and Ancestor Inference with Affine Gap Costs

Jijun Tang, Feng Yue, 2007, BIOCOMP.

Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data

Jijun Tang, Fei Ye, Andrew Lawson, 2007, WEA.

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes

David A. Bader, Jijun Tang, Zhaoming Yin, 2013, ICCS.

Exploring genomes with a game engine

W. Jim Zheng, Yun Zhu, Jijun Tang, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Reconstructing phylogenies from gene-content and gene-order data

Jijun Tang, Bernard M. E. Moret, Tandy Warnow, 2007, Mathematics of Evolution and Phylogeny.

Phylogenetic reconstruction with disk-covering and Bayesian approaches

Jijun Tang, Fei Ye, Yan Guo, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

Identification of drug-side effect association via multiple information integration with centered kernel alignment

Jijun Tang, Fei Guo, Yijie Ding, 2019, Neurocomputing.

Prediction of human protein subcellular localization using deep learning

Jijun Tang, Ran Su, Yijie Ding, 2017, J. Parallel Distributed Comput..

Lost in the Middle Kingdom: a second language acquisition video game

Matthew Arnold, Yun Zhu, Jijun Tang, 2011, ACM-SE '11.

A Median Solver and Phylogenetic Inference Based on DCJ Sorting

Jun Zhou, Jijun Tang, Bing Feng, 2017, ISBRA.

Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?

Yu Lin, Jijun Tang, Bernard M. E. Moret, 2013, Models and Algorithms for Genome Evolution.

Succinct Text Indexes on Large Alphabet

Meng Zhang, Liang Hu, Qiang Li, 2006, TAMC.

An Exact Solver for the DCJ Median Problem

Meng Zhang, William Arndt, Jijun Tang, 2008, Pacific Symposium on Biocomputing.

Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models

Jijun Tang, Fei Hu, Lingxi Zhou, 2013, ISBRA.

Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou's general PseAAC.

Jijun Tang, Fei Guo, Yinan Shen, 2019, Journal of theoretical biology.

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy

Ying Ju, Xiangxiang Zeng, Jijun Tang, 2016, BMC Systems Biology.

Isolating - a new resampling method for gene order data

Jian Shi, William Arndt, Jijun Tang, 2011, 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Identification of drug-target interactions via multiple information integration

Jijun Tang, Fei Guo, Yijie Ding, 2017, Inf. Sci..

Down syndrome prediction/screening model based on deep learning and illumina genotyping array

Yan Zhang, Yan Guo, Jijun Tang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Inferring Ancestral Chloroplast Genomes with Inverted Repea

Jijun Tang, Bernard M. E. Moret, Feng Yue, 2006, BIOCOMP.

Diagnosis of Brain Diseases via Multi-Scale Time-Series Model

Jijun Tang, Fei Guo, Quan Zou, 2019, Front. Neurosci..

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome

W. Jim Zheng, William Arndt, Jijun Tang, 2010, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Emulating Insertion and Deletion Events in Genome Rearrangement Analysis

William Arndt, Jijun Tang, Jijun Tang, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Phylogenetic reconstruction from arbitrary gene-order data

Jijun Tang, Bernard M. E. Moret, Liying Cui, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome

W. Jim Zheng, Jijun Tang, Thomas M. Asbury, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Identification of DNA-Binding Proteins by Multiple Kernel Support Vector Machine and Sequence Information

Xiaoyi Guo, Jijun Tang, Feng Chen, 2020 .

Ancestral Genome Reconstruction on Whole Genome Level

Jijun Tang, Bing Feng, Lingxi Zhou, 2017, Current genomics.

Maximum likelihood phylogenetic reconstruction using gene order encodings

Meng Zhang, Jijun Tang, Fei Hu, 2011, 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference

Yan Zhang, Jijun Tang, Bing Feng, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information

Jijun Tang, Quan Zou, Leyi Wei, 2017, Inf. Sci..

Exploring genomes with a game engine

Yan Zhang, W. Jim Zheng, Jijun Tang, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Learning from real imbalanced data of 14-3-3 proteins binding specificity

Zhao Li, Jijun Tang, Fei Guo, 2016, Neurocomputing.

Scaling up accurate phylogenetic reconstruction from gene-order data

Jijun Tang, Bernard M. E. Moret, Jijun Tang, 2003, ISMB.

The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features

Yan Guo, Hui Yu, Jijun Tang, 2019, IWBBIO.

Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus

Bo Zhang, Jijun Tang, W Jim Zheng, 2018, Nature Communications.

Maximum independent sets of commuting and noninterfering inversions

Krister M. Swenson, Jijun Tang, Bernard M. E. Moret, 2009, BMC Bioinformatics.

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

Yu Lin, Jijun Tang, Fei Hu, 2014, BMC Bioinformatics.

Guest Editorial for the 14th Asia Pacific Bioinformatics Conference (APBC2016)

Lu Tian, Jijun Tang, Yi-Ping Phoebe Chen, 2016, Comput. Biol. Chem..

A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem

Meng Zhang, William Arndt, Jijun Tang, 2008, WABI.

A different approach to teaching Chinese through serious games

Matthew Arnold, Yun Zhu, Jijun Tang, 2011, FDG.

Ancestral reconstruction under weighted maximum matching

Jijun Tang, Jieyi Zhao, Lingxi Zhou, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Steps toward accurate reconstructions of phylogenies from gene-order data

Tandy J. Warnow, Jijun Tang, Bernard M. E. Moret, 2002, J. Comput. Syst. Sci..

Improvement of phylogenetic method to analyze compositional heterogeneity

Jijun Tang, Gaofeng Pan, Fei Guo, 2017, BMC Systems Biology.

Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface

Zhao Li, Jijun Tang, Fei Guo, 2015, J. Chem. Inf. Model..

Phylogenetic Reconstruction for Copy-Number Evolution Problems

Jun Zhou, Jijun Tang, Bing Feng, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting

Jun Zhou, Yu Lin, Jijun Tang, 2017, J. Comput. Biol..

A space-efficient algorithm for three sequence alignment and ancestor inference

Jijun Tang, Feng Yue, Jijun Tang, 2009, Int. J. Data Min. Bioinform..

A Fast 3D Correspondence Method for Statistical Shape Modeling

Xiangrong Zhou, Hiroshi Fujita, Jijun Tang, 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.

Matching a Set of Patterns with Wildcards

Meng Zhang, Jijun Tang, Yi Zhang, 2010, 2010 3rd International Symposium on Parallel Architectures, Algorithms and Programming.

FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data

Jijun Tang, Jason D. Bakos, Panormitis E. Elenis, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis

Chin-Tser Huang, Jijun Tang, S. Mo Jang, 2018, Comput. Hum. Behav..

A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference

Jijun Tang, Feng Yue, Jijun Tang, 2007, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007).

A gaming environment approach to analysis of energy storage for electric/hybrid vehicle

Roger A. Dougal, Jijun Tang, Tianlei Zhang, 2011, 2011 International Conference on Clean Electrical Power (ICCEP).

A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm

Yan Zhang, Jijun Tang, Ruofan Xia, 2018, Int. J. Comput. Biol. Drug Des..

Simultaneous phylogeny reconstruction and multiple sequence alignment

Jian Shi, Jijun Tang, Feng Yue, 2009, BMC Bioinformatics.

Detecting complexes from edge-weighted PPI networks via genes expression analysis

Jian Song, Xinying Xu, Jijun Tang, 2018, BMC Syst. Biol..

HiCComp: Multiple-level comparative analysis of Hi-C data by triplet network

Yan Zhang, Bo Zhang, W. Jim Zheng, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Phylogenetic reconstruction with gene rearrangements and gene losses

Jijun Tang, Fei Hu, Yiwei Zhang, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A New Approach for Tree Alignment Based on Local Re-Optimization

Jijun Tang, Feng Yue, Jijun Tang, 2008, 2008 International Conference on BioMedical Engineering and Informatics.

Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content

Jijun Tang, Bernard M. E. Moret, Jijun Tang, 2003, WADS.

GSO: A Semantic Web Ontology to Capture 3D Genome Structure

Jingcheng Du, Cui Tao, W. Jim Zheng, 2014, SWAT4LS.

Improving Reversal Median Computation Using Commuting Reversals and Cycle Information

William Arndt, Jijun Tang, 2008, J. Comput. Biol..

A sequence-based multiple kernel model for identifying DNA-binding proteins

Jijun Tang, Fei Guo, Limin Jiang, 2021, BMC Bioinformatics.

DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences

Jijun Tang, Fei Guo, Quan Zou, 2020, Briefings Bioinform..

Identification of drug-target interactions via multi-view graph regularized link propagation model

Jijun Tang, Fei Guo, Yijie Ding, 2021, Neurocomputing.

Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment

Jijun Tang, Fei Guo, Yijie Ding, 2021, Briefings Bioinform..

Predicting subcellular location of protein with evolution information and sequence-based deep learning

Jijun Tang, Chao Sun, Zhijun Liao, 2021, BMC Bioinformatics.

Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation

Jijun Tang, Fei Guo, Yijie Ding, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis

Jijun Tang, Dariusz Mrozek, Quan Zou, 2021, IEEE Access.

Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information

Jijun Tang, Fei Guo, Yijie Ding, 2021, Neural Computing and Applications.

A Zero-Shot Method for 3D Medical Image Segmentation

Jijun Tang, Xuejian Li, Fei Guo, 2021, 2021 IEEE International Conference on Multimedia and Expo (ICME).

The design and implementation of the Carolina Automated Reading Evaluation for reading deficit screening

Jijun Tang, Scott L. Decker, William H. Hoskins, 2021, Computers in Human Behavior Reports.

MIASNet: A medical image segmentation method predicting future based on past and current cases

Jijun Tang, Fei Guo, Shiqiang Ma, 2021, 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes

Jijun Tang, Limin Jiang, Yan Guo, 2021, Briefings Bioinform..

RCGA-Net: An Improved Multi-hybrid Attention Mechanism Network in Biomedical Image Segmentation

Jijun Tang, Cong Shen, Yu Chen, 2021, 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A comprehensive overview and critical evaluation of gene regulatory network inference technologies

Jijun Tang, Fei Guo, Mengyuan Zhao, 2021, Briefings Bioinform..

Multivariate information fusion for identifying antifungal peptides with Hilbert-Schmidt Independence Criterion

Jijun Tang, Yijie Ding, Hao Wang, 2021, Current Bioinformatics.

Phylogenetic reconstruction from transpositions

Jijun Tang, Jijun Tang, Feng Yue, 2008, BMC Genomics.

Inferring ancestral chloroplast genomes with inverted repeat

Jijun Tang, Bernard M. E. Moret, Claude W. dePamphilis, 2006 .

Gene Order Phylogeny of the Genus Prochlorococcus

William Arndt, Jijun Tang, Haiwei Luo, 2008, PloS one.

Reconstruction of Ancestral Gene Orders Using Probabilistic and Gene Encoding Approaches

Jijun Tang, Lingxi Zhou, Jijun Tang, 2014, PloS one.

Identification of 14-3-3 Proteins Phosphopeptide-Binding Specificity Using an Affinity-Based Computational Approach

Zhao Li, Jijun Tang, Fei Guo, 2016, PloS one.

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

Jijun Tang, Bernard M. E. Moret, Claude W dePamphilis, 2008, BMC Genomics.

Predicting protein lysine phosphoglycerylation sites by hybridizing many sequence based features.

Jijun Tang, Pu-Feng Du, Jijun Tang, 2017, Molecular bioSystems.

Bi-stream CNN Down Syndrome screening model based on genotyping array

Yan Zhang, Chao Liu, Yan Guo, 2018, BMC Medical Genomics.

Phylogenetic analysis of genome rearrangements among five mammalian orders.

William Arndt, Jijun Tang, Haiwei Luo, 2012, Molecular phylogenetics and evolution.

Phylogeny analysis from gene-order data with massive duplications

Yu Lin, Jijun Tang, Jieyi Zhao, 2017, BMC Genomics.

Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network

Jijun Tang, Lam C. Tsoi, Yusuf A. Hannun, 2014, Nucleic acids research.

Quartet methods for phylogeny reconstruction from gene orders

Jijun Tang, Bernard M. E. Moret, T. Liu, 2005 .

Identification of Inhibitors of MMPS Enzymes via a Novel Computational Approach

Jijun Tang, Fei Guo, Jijun Tang, 2018, International journal of biological sciences.

Complex Detection in PPI Network Using Genes Expression Information

Jijun Tang, Zehua Zhang, Fei Gou, 2017 .

FKL-Spa-LapRLS: an accurate method for identifying human microRNA-disease association

Jijun Tang, Fei Guo, Limin Jiang, 2018, BMC Genomics.

Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files

Jijun Tang, Muhammad Nazmus Sakib, W. Jim Zheng, 2011, PloS one.