John Bagnoli

Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies

Marco A. Riojas, Nikhita P. Puthuveetil, David A. Yarmosh, 2022, mSphere.

PanGIA: A Metagenomics Analytical Framework for Routine Biosurveillance and Clinical Pathogen Detection

Po-E Li, Kyle Parker, Joseph A. Russell, 2020, bioRxiv.

Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies

Marco A. Riojas, Nikhita P. Puthuveetil, David A. Yarmosh, 2021, bioRxiv.

The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance

Marco A. Riojas, Nikhita P. Puthuveetil, David A. Yarmosh, 2021, Microbiology resource announcements.

Development and Optimization of an Unbiased, Metagenomics-Based Pathogen Detection Workflow for Infectious Disease and Biosurveillance Applications

Joseph A. Russell, B. Knight, Alan Shteyman, 2023, Tropical medicine and infectious disease.

Vorpal: A novel RNA virus feature-extraction algorithm demonstrated through interpretable genotype-to-phenotype linear models

P. Davis, J. Bagnoli, D. Yarmosh, 2020, bioRxiv.