Karen Louis

Clinical metagenomics bioinformatics pipeline for the identification of hospital-acquired pneumonia pathogens antibiotic resistance genes from bronchoalveolar lavage samples

J. Schrenzel, V. Lazarevic, E. Ruppé, 2020, bioRxiv.

Dynamic LTR retrotransposon transcriptome landscape in septic shock patients

D. Maucort-Boulch, Aidan MacNamara, T. Rimmele, 2020, Critical Care.

A stratification strategy to predict secondary infection in critical illness-induced immune dysfunction: the REALIST score

D. Maucort-Boulch, Aidan MacNamara, T. Rimmele, 2022, Annals of Intensive Care.

A unique and reliable fecal DNA extraction method for 16S rRNA gene and shotgun metagenomic sequencing in the analysis of the human gut microbiome

H. Rostaing, P. Leissner, Céline Elie, 2020 .

Characterization and analytical validation of a new antigenic rapid diagnostic test for Ebola virus disease detection

P. Lécine, P. Leissner, A. Lugari, 2020, PLoS neglected tropical diseases.

Comparison of DNA extraction methods for 16S rRNA gene sequencing in the analysis of the human gut microbiome

H. Rostaing, P. Leissner, Céline Elie, 2023, Scientific reports.

Integrated clustering of multiple immune marker trajectories reveals different immunotypes in severely injured patients

K. Brengel-Pesce, P. Leissner, V. Cheynet, 2024, Critical care.