Mauro A. A. Castro

发表

RTNsurvival: an R/Bioconductor package for regulatory network survival analysis

Steven J. M. Jones, Clarice S. Groeneveld, Vinicius S. Chagas, 2019, Bioinform..

Posterior Association Networks and Functional Modules Inferred from Rich Phenotypes of Gene Perturbations

Xin Wang, Mauro A. A. Castro, Florian Markowetz, 2012, PLoS Comput. Biol..

ViaComplex: software for landscape analysis of gene expression networks in genomic context

Mauro A. A. Castro, Marialva Sinigaglia, José L. Rybarczyk Filho, 2009, Bioinform..

An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability

Mauro A. A. Castro, Marialva Sinigaglia, Giovani Rubert Librelotto, 2009, BSB.

GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks

Mauro A. A. Castro, Ney Lemke, Luiz A. Bovolenta, 2013, Bioinform..

RTNduals: an R/Bioconductor package for analysis of co-regulation and inference of dual regulons

Steven J. M. Jones, Clarice S. Groeneveld, Vinicius S. Chagas, 2019, Bioinform..

A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma

Mauro A. A. Castro, A. G. Robertson, J. Raman, 2022, Scientific Reports.

Reply To Kenneth B. Yatai, Mark J. Dunning, Dennis Wang. Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go. Eur Urol 2020;77:434 – 5

Mauro A. A. Castro, K. Hoadley, N. Malats, 2019 .

Comprehensive Characterization of the Regulatory Landscape of Adrenocortical Carcinoma: Novel Transcription Factors and Targets Associated with Prognosis

Mauro A. A. Castro, B. Figueiredo, J. D. de Moura, 2022, Cancers.

FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation

Mauro A. A. Castro, A. Lenis, N. Socci, 2022, Nature Communications.

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

Steven J. M. Jones, Vinicius S. Chagas, Mauro A. A. Castro, 2017, Cell.

Identification of Differential Tumor Subtypes of T1 Bladder Cancer.

Mauro A. A. Castro, Lauren S. Mogil, A. G. Robertson, 2020, European urology.

AKT3 Expression in Mesenchymal Colorectal Cancer Cells Drives Growth and Is Associated with Epithelial-Mesenchymal Transition

Mauro A. A. Castro, G. Stassi, L. Vermeulen, 2021, Cancers.

A Consensus Molecular Classification of Muscle-invasive Bladder Cancer

Mauro A. A. Castro, J. Weinstein, K. Hoadley, 2019, European urology.

The chromatin accessibility landscape of primary human cancers

Mauro A. A. Castro, Nathan C. Sheffield, Howard Y. Chang, 2018, Science.

Unraveling Immune-Related lncRNAs in Breast Cancer Molecular Subtypes

Mauro A. A. Castro, C. Mathias, Jaqueline Carvalho de Oliveira, 2021, Frontiers in Oncology.

Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight

Mauro A. A. Castro, A. G. Robertson, I. Martincorena, 2021, Cell reports. Medicine.

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Steven J. M. Jones, Mauro A. A. Castro, Benjamin J. Raphael, 2021, Cell reports.

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

Vinicius S. Chagas, Mauro A. A. Castro, G. Getz, 2018, Cell.

Reply To Kenneth B. Yatai, Mark J. Dunning, Dennis Wang. Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go. Eur Urol. In press.

Mauro A. A. Castro, J. Weinstein, K. Hoadley, 2020, European urology.

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix

Mauro A. A. Castro, N. A. Jorge, F. Passetti, 2021, Frontiers in Oncology.

Long non-coding RNAs identify a subset of luminal muscle-invasive bladder cancer patients with favorable prognosis

Mauro A. A. Castro, A. G. Robertson, Y. Lotan, 2019, Genome Medicine.

spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape

Mauro A. A. Castro, A. G. Robertson, J. Baumbach, 2023, bioRxiv.

Which came first, the transcriptional regulator or its target genes? An evolutionary perspective into the construction of eukaryotic regulons.

Mauro A. A. Castro, J. M. Ortega, M. Castro, 2019, Biochimica et biophysica acta. Gene regulatory mechanisms.

Protein Function Prediction.

Mauro A. A. Castro, Leonardo Magalhães Cruz, Sheyla Trefflich, 2017, Methods in molecular biology.

Novel lncRNAs Co-Expression Networks Identifies LINC00504 with Oncogenic Role in Luminal A Breast Cancer Cells

Mauro A. A. Castro, C. Groeneveld, R. Lima, 2021, International journal of molecular sciences.

IFN-λ4 may contribute to HCV persistence by increasing ER stress and enhancing IRF1 signaling

Mauro A. A. Castro, C. Tanikawa, K. Matsuda, 2020, bioRxiv.

Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer

Mauro A. A. Castro, A. G. Robertson, F. Montorsi, 2021, Nature communications.

Comprehensive molecular characterization and analysis of muscle-invasive urothelial carcinomas.

Mauro A. A. Castro, J. Weinstein, G. Mills, 2017 .