J. Ciarkowski

发表

Theoretical models of catalytic domains of protein phosphatases 1 and 2A with Zn2+ and Mn2+ metal dications and putative bioligands in their catalytic centers.

S. Ołdziej, E. Wozniak-Celmer, J. Ciarkowski, 2001, Acta biochimica Polonica.

The LA Loop as an Important Regulatory Element of the HtrA (DegP) Protease from Escherichia coli

A. Giełdoń, B. Banecki, A. Lesner, 2014, The Journal of Biological Chemistry.

Conformational studies of neurohypophyseal hormones analogues with glycoconjugates by NMR spectroscopy

E. Sikorska, E. Lubecka, J. Ciarkowski, 2014, Journal of peptide science : an official publication of the European Peptide Society.

Oxytocin receptors and cholesterol: interaction and regulation

G. Gimpl, F. Fahrenholz, J. Ciarkowski, 2000, Experimental physiology.

Structural insights into the activation mechanisms of human HtrA serine proteases.

A. Giełdoń, J. Skorko-Glonek, J. Ciarkowski, 2017, Archives of biochemistry and biophysics.

Structural studies of cysteine proteases and their inhibitors.

M. Jaskólski, L. Lankiewicz, R. Janowski, 2001, Acta biochimica Polonica.

Conformational aspects of differences in requirements for oxytocin and vasopressin receptors.

A. Liwo, S. Ołdziej, Z. Grzonka, 1995, Journal of receptor and signal transduction research.

Use of NMR and fluorescence spectroscopy as well as theoretical conformational analysis in conformation-activity studies of cyclic enkephalin analogues.

A. Liwo, L. Lankiewicz, C. Czaplewski, 2004, Current topics in medicinal chemistry.

Conformation-activity relationships of cyclo-constrained mu/delta opioid agonists derived from the N-terminal tetrapeptide segment of dermorphin/deltorphin.

C. Czaplewski, P. Schiller, S. Rodziewicz-Motowidło, 2009, Advances in experimental medicine and biology.

Deltorphin analogs restricted via a urea bridge: structure and opioid activity.

C. Czaplewski, P. Schiller, S. Rodziewicz-Motowidło, 2009, Advances in experimental medicine and biology.

Conformation‐activity relationships of cyclo‐constrained µ/δ opioid agonists derived from the N‐terminal tetrapeptide segment of dermorphin/deltorphin

C. Czaplewski, J. Ciarkowski, Sylwia Rodziewicz‐MotowidŁo, 2008, Journal of peptide science : an official publication of the European Peptide Society.

Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies

E. Sikorska, E. Lubecka, J. Slaninová, 2015, European Biophysics Journal.

Conformation of dioxopiperazines. V: Consistent treatment and its implications

R. Jankowska, J. Ciarkowski, 2009 .

Conformation of cyclo-(D-phenylalanyl-trans-4-fluoro-D-prolyl).

M. Gdaniec, A. Kołodziejczyk, J. Ciarkowski, 2009, International journal of peptide and protein research.

Synthesis, biological activity and solution structure of new analogues of the antimicrobial Gramicidin S

S. Rodziewicz-Motowidło, W. Kamysz, E. Kamysz, 2011, Journal of peptide science : an official publication of the European Peptide Society.

Thin-layer chromatographic separation of the Z and E rotational isomers of alpha-N-nitroso-N-alkylamino acids.

J. Ciarkowski, B. Liberek, K. Plucińska, 1974, Journal of chromatography.

Conformation of dioxopiperazines, II. CNDO/2 quantum mechanical calculations on conformational preferences in cyclo (glycyl‐L‐alanyl), cyclo(glycyl‐L‐valyl), and both epimers of cyclo‐di‐(alanyl)

J. Ciarkowski, H. Bieliński, 1986 .

Exploration of the conformational space of oxytocin and arginine-vasopressin using the electrostatically driven Monte Carlo and molecular dynamics methods.

V J Hruby, A. Liwo, L. Lankiewicz, 1998, Biopolymers.

Conformational solution studies of [Sar7]desamino‐ and [MeAla7]desamino‐ vasopressin analogues using NMR spectroscopy

S. Rodziewicz-Motowidło, F. Kasprzykowski, J. Wójcik, 2002, Journal of peptide science : an official publication of the European Peptide Society.

A hypothesis for GPCR activation

R. Ślusarz, J. Ciarkowski, M. Witt, 2005, Journal of molecular modeling.

Relationships between the acidity of the Z and E isomers of N‐Nitroso‐N‐alkyl‐α‐amino acids and their conformations

J. Ciarkowski, K. Stachowiak, B. Liberek, 1982 .

Z-E conformational dependence of the N-nitrosamine circular dichroism. The need of revision of the nitrosamine sector rule

J. Ciarkowski, K. Stachowiak, B. Liberek, 1976 .

Reaction mechanisms in peptide synthesis. Part 2. Tautomerism of the peptide bond

Jerzy Ciarkowski, Francis M. F. Chen, N. Leo Benoiton, 1991, J. Comput. Aided Mol. Des..

Wound infection caused by Kanagawa-negative Vibrio parahaemolyticus

R. Colwell, D. Johnson, P. West, 1984, Journal of clinical microbiology.

Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors—molecular dynamics study of the activated receptor–vasopressin–Gα systems

R. Ślusarz, A. Giełdoń, M. Ślusarz, 2006, Journal of peptide science : an official publication of the European Peptide Society.

Reaction mechanisms in peptide synthesis. Part 1. Semiquantitative characteristics of the reactivity of 2-methyl-5(4H)-oxazolone with water and ammonia in the gas phase and weakly polar media

Jerzy Ciarkowski, Francis M. F. Chen, N. Leo Benoiton, 1991, J. Comput. Aided Mol. Des..

Deltorphin analogs restricted via a urea bridge: structure and opioid activity

C. Czaplewski, P. Schiller, S. Rodziewicz-Motowidło, 2008, Journal of peptide science : an official publication of the European Peptide Society.

Highly Potent Antidiuretic Antagonists: Conformational Studies of Vasopressin Analogues Modified with 1‐Naphthylalanine Enantiomers at Position 2

E. Sikorska, E. Lubecka, A. Prahl, 2012, Chemical biology & drug design.

NMR studies of new arginine vasopressin analogs modified with alpha-2-indanylglycine enantiomers at position 2 bound to sodium dodecyl sulfate micelles.

E. Sikorska, E. Lubecka, A. Kwiatkowska, 2010, Biophysical chemistry.

Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin V1a and oxytocin receptors: Molecular dynamics simulation of the agonist‐bound state in the membrane–aqueous system

R. Ślusarz, M. Ślusarz, J. Ciarkowski, 2006, Biopolymers.

G Protein-coupled receptor–bioligand interactions modeled in a phospholipid bilayer

C. Czaplewski, M. Pasenkiewicz-Gierula, J. Ciarkowski, 1999 .

Molecular modeling of the human vasopressin V2 receptor/agonist complex

Cezary Czaplewski, Rajmund Kazmierkiewicz, Jerzy Ciarkowski, 1998, J. Comput. Aided Mol. Des..

Conformation of dioxopiperazines. III. Conformational‐energy calculations and evaluation of specific forces contributing to the intramolecular dioxopiperazine‐phenyl ring‐ring folding in cyclo(glycyl‐phenylalanyl)

A. Kołodziejczyk, J. Ciarkowski, A. Kolodziejczyk, 1986 .

CNDO/2 quantum‐mechanical calculations of the conformational flexibility of the diketopiperazine skeleton

J. Ciarkowski, 1984 .

Distinct 3D Architecture and Dynamics of the Human HtrA2(Omi) Protease and Its Mutated Variants

Artur Gieldon, Jerzy Ciarkowski, G. Dubin, 2016, PloS one.

Molecular Modeling of Vasopressin V2 Receptor Tetramer in Hydrated Lipid Membrane

M. Ślusarz, J. Ciarkowski, M. Witt, 2008 .

Potent antidiuretic agonists, deamino‐vasopressin and desmopressin, and their inverso analogs: NMR structure and interactions with micellar and liposomic models of cell membrane

E. Sikorska, E. Lubecka, J. Slaninová, 2016, Biopolymers.

Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin—modeling of an activated state

R. Ślusarz, M. Ślusarz, J. Ciarkowski, 2006, Journal of peptide science : an official publication of the European Peptide Society.

An enormously active and selective azapeptide inhibitor of cathepsin B

Jerzy Ciarkowski, Elzbieta Jankowska, E. Jankowska, 2007, Journal of peptide science : an official publication of the European Peptide Society.

Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectories

Cezary Czaplewski, Rajmund Kazmierkiewicz, Jerzy Ciarkowski, 1999, J. Comput. Aided Mol. Des..

Molecular Modeling of Meta II Rhodopsin

R. Ślusarz, M. Ślusarz, J. Ciarkowski, 2006 .

Temperature-induced changes of HtrA2(Omi) protease activity and structure

A. Giełdoń, A. Lesner, J. Ciarkowski, 2012, Cell Stress and Chaperones.

Temperature-induced conformational changes within the regulatory loops L1-L2-LA of the HtrA heat-shock protease from Escherichia coli.

A. Giełdoń, F. Tanfani, Andrea Scirè, 2009, Biochimica et biophysica acta.

Origin of the ring-ring interaction in cyclic dipeptides incorporating an aromatic amino acid

A. Liwo, J. Ciarkowski, 1985 .

Intra- and intersubunit changes accompanying thermal activation of the HtrA2(Omi) protease homotrimer.

A. Giełdoń, A. Lesner, M. Wysocka, 2016, Biochimica et biophysica acta.

Binding modes of a new epoxysuccinyl-peptide inhibitor of cysteine proteases. Where and how do cysteine proteases express their selectivity?

M. Jaskólski, C. Czaplewski, M. Kozak, 1999, Biochimica et biophysica acta.

Molecular modelling study of the role of cholesterol in the stimulation of the oxytocin receptor.

F. Fahrenholz, R. Kazmierkiewicz, J. Ciarkowski, 2001, Acta biochimica Polonica.

Structural studies of the C‐terminal 19‐peptide of serum amyloid A and its Pro→Ala variants interacting with human cystatin C

P. Czaplewska, S. Rodziewicz-Motowidło, N. Karska, 2015, Journal of molecular recognition : JMR.

Molecular modeling of the neurophysin I/oxytocin complex

Cezary Czaplewski, Rajmund Kazmierkiewicz, Jerzy Ciarkowski, 1997, J. Comput. Aided Mol. Des..

Molecular dynamics of a vasopressin V2 receptor in a phospholipid bilayer membrane.

C. Czaplewski, M. Pasenkiewicz-Gierula, J. Ciarkowski, 1999, Journal of receptor and signal transduction research.

Ensemble fits of restrained peptides' conformational equilibria to NMR data. Dependence on force fields: AMBER/8 ff03 versus ECEPP/3.

E. Sikorska, J. Wójcik, Dawid Jagiela, 2012, Journal of molecular graphics & modelling.

Conformation of dioxopiperazines: Part 7. The dependence of the internal coordinates on puckering of the 2,5-dioxopiperazine ring

M. Gdaniec, A. Kołodziejczyk, J. Ciarkowski, 1989 .

Temperature-induced changes of HtrA2(Omi) protease activity and structure

A. Giełdoń, A. Lesner, J. Ciarkowski, 2012, Cell Stress and Chaperones.

Molecular Modeling of the Catalytic Domain of Serine/threonine Phosphatase-1with the Zn2+ and Mn2+ Di-nuclear Ion Centers in the Active Site

Jerzy Ciarkowski, Stanislaw Oldziej, Edyta Wozniak, 2000, Comput. Chem..

Prediction of conformation of rat galanin in the presence and absence of water with the use of monte Carlo methods and the ECEPP/3 force field

A. Liwo, S. Rackovsky, A. Liwo, 1994, Journal of protein chemistry.

Conformation of cyclodipeptides: Part 8. The model-building algorithm

J. Ciarkowski, J. Liwo, 1989 .

Conformation of cyclodipeptides. factor analysis: a convenient tool for simplifying conformational studies of condensed poly-ring systems: prolyltype cyclopeptides

S. Ołdziej, P. Dokurno, M. Gdaniec, 1990 .

The role of the L2 loop in the regulation and maintaining the proteolytic activity of HtrA (DegP) protein from Escherichia coli.

A. Giełdoń, F. Tanfani, Andrea Scirè, 2010, Archives of biochemistry and biophysics.

Molecular docking-based study of vasopressin analogues modified at positions 2 and 3 with N-methylphenylalanine: influence on receptor-bound conformations and interactions with vasopressin and oxytocin receptors.

R. Ślusarz, E. Sikorska, M. Ślusarz, 2006, Journal of Medicinal Chemistry.

Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors.

Artur Gieldon, Rajmund Kazmierkiewicz, Rafal Slusarz, 2001, J. Comput. Aided Mol. Des..

Molecular modeling of the oxytocin receptor/bioligand interactions.

C. Czaplewski, J. Ciarkowski, E. Politowska, 1999, Acta biochimica Polonica.

Study of New Oxytocin Antagonist Barusiban (Fe200 440) Affinity Toward Human Oxytocin Receptor Versus Vasopressin V1a and V2 Receptors – Molecular Dynamics Simulation in POPC Bilayer

R. Meadows, R. Ślusarz, A. Giełdoń, 2005 .

Mechanism of action of aspartic proteinases: Application of transition-state analogue theory

Jerzy Ciarkowski, Stanislaw Oldziej, S. Ołdziej, 1996, J. Comput. Aided Mol. Des..

AMI and PM3 study of a low molecular weight structural mimic of hydrogen exchange within the catalytic center of aspartic proteases

J. Ciarkowski, Stanislaw Oŀdziej, 1993, European Biophysics Journal.

Molecular modelling of the vasopressin V2 receptor/antagonist interactions.

C. Czaplewski, R. Kazmierkiewicz, J. Ciarkowski, 1998, Acta biochimica Polonica.

Conformation of dioxopiperazines. VI: Review of selected conformational preferences

M. Gdaniec, R. Jankowska, J. Ciarkowski, 2009 .

Conformational studies of neurohypophyseal hormones analogues with glycoconjugates by NMR spectroscopy

E. Sikorska, E. Lubecka, J. Ciarkowski, 2014, Journal of peptide science : an official publication of the European Peptide Society.

Vasopressin V2 receptor/bioligand interactions

C. Czaplewski, R. Kazmierkiewicz, J. Ciarkowski, 1998, Letters in Peptide Science.