S. Satapathy

发表

Constraint on di-nucleotides by codon usage bias in bacterial genomes.

A. Buragohain, S. K. Ray, S. Satapathy, 2014, Gene.

A Web Portal to Calculate Codon Adaptation Index (CAI) with Organism Specific Reference Set of High Expression Genes for Diverse Bacteria Species

A. Waris, S. K. Ray, S. Satapathy, 2019 .

Comparative analysis of codon usage bias in Crenarchaea and Euryarchaea genome reveals differential preference of synonymous codons to encode highly expressed ribosomal and RNA polymerase proteins

A. Buragohain, S. K. Ray, V. J. Baruah, 2016, Journal of Genetics.

Codon degeneracy and amino acid abundance influence the measures of codon usage bias: improved Nc (N̂c) and ENCprime (N̂′c) measures

T. Ghosh, S. K. Ray, A. Sahoo, 2017, Genes to cells : devoted to molecular & cellular mechanisms.

Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons

E. Feil, M. Dash, R. Deka, 2022, DNA research : an international journal for rapid publication of reports on genes and genomes.

Is Immunomodulatory Property of Hydroxychloroquine Beneficial for Severe COVID-19? A Hospital Based Retrospective Observational Study

S. Satapathy, Debabrata Behera, P. Mishra, 2021 .

Machine learning approach identifies prominent codons from different degenerate groups influencing gene expression in bacteria

S. K. Ray, S. Satapathy, Piyali Sen, 2022, Genes to cells : devoted to molecular & cellular mechanisms.

Stem Region of tRNA Genes Favors Transition Substitution Towards Keto Bases in Bacteria

E. Feil, R. Deka, S. K. Ray, 2022, Journal of Molecular Evolution.

Erratum to: Transfer RNA Gene Numbers may not be Completely Responsible for the Codon Usage Bias in Asparagine, Isoleucine, Phenylalanine, and Tyrosine in the High Expression Genes in Bacteria

A. Buragohain, S. K. Ray, S. Satapathy, 2012, Journal of Molecular Evolution.

Cotranslational protein folding reveals the selective use of synonymous codons along the coding sequence of a low expression gene

S. K. Ray, R. Banerjee, V. J. Baruah, 2014, Journal of Genetics.

Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterial groups: alpha-proteobacteria and tenericutes exhibit strong positive correlation.

S. K. Ray, S. Satapathy, Malay Dutta, 2010, Microbiological research.

Polymorphism at four-fold degenerate site, but not at the intergenic regions, explains nucleotide compositional strand asymmetry in bacteria

E. Feil, R. Deka, Soumita Das, 2021, bioRxiv.

A Study in Entire Chromosomes of Violations of the Intra-strand Parity of Complementary Nucleotides (Chargaff's Second Parity Rule)

Munindra Borah, Suvendra Kumar Ray, Siddhartha Sankar Satapathy, 2009, DNA Research.

Discrepancy among the synonymous codons with respect to their selection as optimal codon in bacteria

A. Buragohain, S. K. Ray, S. Satapathy, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

The Entner-Doudoroff and Nonoxidative Pentose Phosphate Pathways Bypass Glycolysis and the Oxidative Pentose Phosphate Pathway in Ralstonia solanacearum

Suvendra Kumar Ray, Siddhartha Sankar Satapathy, Tulika Prakash, 2020, mSystems.

Entner–Doudoroff pathway and Non-OxPPP bypasses glycolysis and OxPPP in Ralstonia solanacearum

S. K. Masakapalli, M. Shree, S. K. Ray, 2020, bioRxiv.

Codon Usage Bias is not Significantly Different between the High and the Low Expression Genes in Human

T. Ghosh, S. K. Ray, A. Sahoo, 2016 .

Higher tRNA diversity in thermophilic bacteria: a possible adaptation to growth at high temperature.

S. K. Ray, S. Satapathy, Malay Dutta, 2010, Microbiological research.

Stem Region of tRNA Genes Favors Transition Substitution Towards Keto Bases in Bacteria

E. Feil, R. Deka, S. K. Ray, 2022, Journal of Molecular Evolution.

Selection on GGU and CGU Codons in the High Expression Genes in Bacteria

A. Buragohain, S. Satapathy, B. R. Powdel, 2013, Journal of Molecular Evolution.

Gene Essentiality Mediated Base Substitution in Escherichia coli genome: Machine Learning Analysis

S. K. Ray, S. Satapathy, Piyali Sen, 2022, 2022 International Interdisciplinary Conference on Mathematics, Engineering and Science (MESIICON).

TREEPSI: tree based energy efficient protocol for sensor information

N. Sarma, S.S. Satapathy, N. Sarma, 2006, 2006 IFIP International Conference on Wireless and Optical Communications Networks.

Selection on GGU and CGU Codons in the High Expression Genes in Bacteria

A. Buragohain, S. K. Ray, S. Satapathy, 2013, Journal of Molecular Evolution.