Saurabh Baheti

发表

Computational performance and accuracy of Sentieon DNASeq variant calling workflow

Mikel Hernaez, Katherine Kendig, Saurabh Baheti, 2018, bioRxiv.

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Saurabh Baheti, Rahul Kanwar, Meike Goelzenleuchter, 2016, BMC Genomics.

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4

Ravishankar K. Iyer, Saurabh Baheti, Travis M. Drucker, 2019, BMC Bioinformatics.

The eSNV-Detect workflow.

Saurabh Baheti, Krishna R. Kalari, David Rossell, 2013 .

RVboost: RNA-seq variants prioritization using a boosting method

Xue Wang, Saurabh Baheti, Jean-Pierre A. Kocher, 2014, Bioinform..

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

Saurabh Baheti, Eric W. Klee, Xing Li, 2012, Bioinform..

Methods workflow for HER2 transcriptomic network.

Saurabh Baheti, Krishna R. Kalari, David Rossell, 2013 .

Recommendations for performance optimizations when using GATK3.8 and GATK4

Saurabh Baheti, Matthew A Bockol, Travis M. Drucker, 2019, BMC Bioinformatics.

Schematic of analytical approach.

Saurabh Baheti, Krishna R. Kalari, David Rossell, 2013 .

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

Saurabh Baheti, Krishna R. Kalari, Jean-Pierre A. Kocher, 2014, BMC Bioinformatics.

Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data

Yun Zhang, Saurabh Baheti, Zhifu Sun, 2016, Briefings Bioinform..

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

Ying Li, Saurabh Baheti, Eric W. Klee, 2011, Bioinform..

Performance benchmarking of GATK3.8 and GATK4

Saurabh Baheti, Matthew A Bockol, Travis M. Drucker, 2018 .

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

Mikel Hernaez, Saurabh Baheti, Travis M. Drucker, 2019, Front. Genet..

Comparative analysis of workflow management systems in production genomics research and the clinic

Katherine Kendig, Saurabh Baheti, Travis M. Drucker, 2020 .

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Saurabh Baheti, Krishna R. Kalari, Jean-Pierre A. Kocher, 2018, BMC Bioinform..

From Days to Hours: Reporting Clinically Actionable Variants from Whole Genome Sequencing

Saurabh Baheti, Steven N. Hart, Jean-Pierre A. Kocher, 2014, PloS one.

Identification of differentially methylated regions in new genes associated with knee osteoarthritis.

Saurabh Baheti, Michael J Stuart, Jennifer J Westendorf, 2016, Gene.

An Integrated Model of the Transcriptome of HER2-Positive Breast Cancer

Saurabh Baheti, Krishna R. Kalari, Kevin J. Thompson, 2013, PloS one.

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants.

Trevor Hastie, Predrag Radivojac, Saurabh Baheti, 2016, American journal of human genetics.

Comprehensively evaluating cis-regulatory variation in the human prostate transcriptome by using gene-level allele-specific expression.

Saurabh Baheti, Nicholas B Larson, Daniel J Schaid, 2015, American journal of human genetics.