Daming Zhu

发表

Dynamic matching algorithm for viral structure prediction.

Caiming Zhang, Hengwu Li, Daming Zhu, 2014, Pakistan journal of pharmaceutical sciences.

A polynomial algorithm to compute the minimum degree spanning trees of directed acyclic graphs with applications to the broadcast problem

Daming Zhu, Guohui Yao, Hengwu Li, 2008, Discret. Math..

De Novo Peptide Sequencing Based on Vertex Contraction Algorithm

Daming Zhu, Zhexue Wei, 2012, 2012 Fifth International Joint Conference on Computational Sciences and Optimization.

A factor-(1.408 + ε) approximation for sorting unsigned genomes by reciprocal translocations

Lusheng Wang, Binhai Zhu, Daming Zhu, 2015, Theor. Comput. Sci..

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees

Jin Zhao, Chi Zhang, Daming Zhu, 2018, ICIC.

A 2-Approximation Algorithm for the Complementary Maximal Strip Recovery Problem

Binhai Zhu, Daming Zhu, Jiong Guo, 2019, CPM.

A translocation, insertion and deletion distance formula for sorting genomes

Daming Zhu, Haodi Feng, Fanchang Hao, 2009, 2009 4th International Conference on Computer Science & Education.

PASA: Identifying More Credible Structural Variants of Hedou12

Jingjing Ma, Daming Zhu, Ruizhi Wang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Complexity and Approximation Results for the Min-Sum and Min-Max Disjoint Paths Problems

Peng Zhang, Daming Zhu, Wenbo Zhao, 2013, Comput. Informatics.

A 1.75-approximation algorithm for unsigned translocation distance

Lusheng Wang, Daming Zhu, Yun Cui, 2007, J. Comput. Syst. Sci..

An Approximation Scheme for RNA Folding Structure Prediction Including Pseudoknots

Wei Cui, Nan Liu, Daming Zhu, 2013, 2013 Ninth International Conference on Computational Intelligence and Security.

Identifying MoRFs in Disordered Proteins Using Enlarged Conserved Features

Kentaro Shimizu, Daming Zhu, Chun Fang, 2018, ICBCB 2018.

Improved approximation algorithm of RNA structure prediction with pseudoknots

Daming Zhu, Zhendong Liu, 2012, 2012 IEEE International Conference on Information and Automation.

A faster algorithm for gene-duplication problem based on rSPR local search

Daming Zhu, Jian Zhang, 2010, 2010 3rd International Conference on Advanced Computer Theory and Engineering(ICACTE).

Minimum common string partition revisited

Hong Zhu, Binhai Zhu, Daming Zhu, 2010, J. Comb. Optim..

Analysis of the Convergency of Topology Preserving Neural Networks on Learning

Daming Zhu, Shaohan Ma, Hongze Qiu, 1994, ISAAC.

Adjusting Computer Adaptive Test Starting Points To Conserve Item Pool.

Daming Zhu, Meichu Fan, 1999 .

A (1.5 + epsilon)-Approximation Algorithm for Unsigned Translocation Distance

Lusheng Wang, Daming Zhu, Yun Cui, 2008, IEEE ACM Trans. Comput. Biol. Bioinform..

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads

Jin Zhao, Ying Xu, Daming Zhu, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Predicting Algorithm of RNA Folding Structure with Pseudoknots

Qionghai Dai, Daming Zhu, Zhendong Liu, 2015, 2015 11th International Conference on Computational Intelligence and Security (CIS).

The Longest Common Exemplar Subsequence Problem

Daming Zhu, Shu Zhang, Jiong Guo, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

An expert system shell for boiler information management systems

Daming Zhu, Jun Ma, Shaohan Ma, 1997, 1997 IEEE International Conference on Intelligent Processing Systems (Cat. No.97TH8335).

A 14/11-approximation algorithm for sorting by short block-moves

Daming Zhu, Haitao Jiang, 2010, Science China Information Sciences.

Genome Rearrangement Algorithms for Unsigned Permutations with O(logn) Singletons

Daming Zhu, Xiaowen Lou, 2008, TAMC.

On Constrained Facility Location Problems

Peng Zhang, Daming Zhu, Wei-Lin Li, 2008, Journal of Computer Science and Technology.

DNA Computing Model for the Minimum Spanning Tree Problem

Daming Zhu, Aili Han, 2006, 2006 Eighth International Symposium on Symbolic and Numeric Algorithms for Scientific Computing.

An Exact Algorithm for the Zero Exemplar Breakpoint Distance Problem

Lusheng Wang, Daming Zhu, Daming Zhu, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Implementing program extraction from CL1-proofs pdf

Ke Chen, Daming Zhu, Meixia Qu, 2013, ArXiv.

Fast implementation of scalar multiplication using pipeline method

Daming Zhu, Ming Li, 2012 .

Complexity Analysis for the HEWN Algorithm

Daming Zhu, Aili Han, 2006, Sixth International Conference on Intelligent Systems Design and Applications.

Sorting unsigned permutations by weighted reversals, transpositions, and transreversals

Daming Zhu, Xiao-Wen Lou, 2010 .

A 2.25-Approximation Algorithm for Cut-and-Paste Sorting of Unsigned Circular Permutations

Daming Zhu, Xiaowen Lou, 2008, COCOON.

New Heuristic Algorithm of RNA Secondary Structure Prediction with Pseudoknots

Zhijun Zhang, Daming Zhu, Zhendong Liu, 2011, 2011 Seventh International Conference on Computational Intelligence and Security.

Isomorphism and similarity for 2-generation pedigrees

Binhai Zhu, Guohui Lin, Daming Zhu, 2015, BMC Bioinformatics.

Analysis of the Hamming Weight of the Extended wmbNAF

Ming Li, Daming Zhu, Ali Miri, 2011, IACR Cryptol. ePrint Arch..

Local Search to Approximate Max NAE- k k -Sat Tightly

Daming Zhu, Lianrong Pu, Kaiyuan Zhu, 2015, FAW.

Translocation-Deletions Distance Formula for Sorting Genomes

Daming Zhu, Fanchang Hao, Junfeng Luan, 2009, 2009 WRI World Congress on Computer Science and Information Engineering.

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees

Jin Zhao, Daming Zhu, Chi Zhang, 2019, BMC Bioinformatics.

DNA solution based on sequence alignment to the Minimum Spanning Tree problem

Daming Zhu, Aili Han, Jingchang Pan, 2008, Int. J. Bioinform. Res. Appl..

Algorithms for sorting unsigned linear genomes by the DCJ operations

Binhai Zhu, Daming Zhu, Haitao Jiang, 2011, Bioinform..

The Duplication-Loss Problem: Novel Algorithms Based on k-NNI Local Search

Hui Wang, Daming Zhu, 2013, 2013 Sixth International Conference on Business Intelligence and Financial Engineering.

A 4/3-approximation algorithm for finding a spanning tree to maximize its internal vertices pdf

Daming Zhu, Xingfu Li, 2014, ArXiv.

A 2-approximation algorithm for the contig-based genomic scaffold filling problem

Binhai Zhu, Daming Zhu, Letu Qingge, 2018, J. Bioinform. Comput. Biol..

Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots

Qionghai Dai, Daming Zhu, Zhendong Liu, 2018, Int. J. Pattern Recognit. Artif. Intell..

A predicting algorithm of RNA secondary structure based on stems

Daming Zhu, Hengwu Li, Zhendong Liu, 2010, Kybernetes.

A new approximation algorithm for cut-and-paste sorting of unsigned circular permutations

Daming Zhu, Xiaowen Lou, 2012, J. Comput. Syst. Sci..

Sorting Genomes by Reversals and Translocations

Daming Zhu, Xiao Yin, 2009, 2009 Asia-Pacific Conference on Information Processing.

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor

Hong Liu, Daming Zhu, Haodi Feng, 2007, ADMA.

Frontiers in Algorithmics

Sergey Bereg, Daming Zhu, 2016, Lecture Notes in Computer Science.

Approximating the Maximum Internal Spanning Tree Problem via a Maximum Path-Cycle Cover

Daming Zhu, Xingfu Li, Daming Zhu, 2014, ISAAC.

Fast Algorithm for Converting Ordinary Elliptic Curves into Binary Edward Form

Daming Zhu, Ming Li, Ali Miri, 2012 .

A 1.5-Approximation Algorithm for Two-Sided Scaffold Filling

Nan Liu, Binhai Zhu, Daming Zhu, 2014, Algorithmica.

Protein-protein binding site identification by enumerating the configurations

Lusheng Wang, Shuai Cheng Li, Daming Zhu, 2012, BMC Bioinformatics.

On the complexity of unsigned translocation distance

Lusheng Wang, Daming Zhu, 2006, Theor. Comput. Sci..

A New DNA-Based Approach to Solve the Maximum Weight Clique Problem

Daming Zhu, Aili Han, 2006, ICIC.

Faster algorithms for sorting by transpositions and sorting by block interchanges

Daming Zhu, Jianxing Feng, 2007, TALG.

Genomic Scaffold Filling Revisited

Boting Yang, Binhai Zhu, Daming Zhu, 2016, CPM.

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves

Daming Zhu, Haitao Jiang, Haodi Feng, 2014, ISAAC.

A 14/11-approximation algorithm for sorting by short block-moves

Daming Zhu, Haitao Jiang, Daming Zhu, 2009, 2009 International Joint Conference on Computational Sciences and Optimization.

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear LP-Rounding

Binhai Zhu, Daming Zhu, Haitao Jiang, 2019, ISBRA.

Improved algorithms for intermediate dataset storage in a cloud-based dataflow

Binhai Zhu, Daming Zhu, Jie Cheng, 2017, Theor. Comput. Sci..

New Evolutionary Subset: Application to Symbiotic Evolutionary Algorithm for Job-Shop Scheduling Problem

Daming Zhu, Haodi Feng, Hongze Qiu, 2008, 2008 Fourth International Conference on Natural Computation.

CTRD: a fast applet for computing signed translocation distance between genomes

Lusheng Wang, Daming Zhu, Wangsen Feng, 2004, Bioinform..

Faster Algorithms for Sorting by Transpositions and Sorting by Block-Interchanges

Daming Zhu, Jianxing Feng, 2006, TAMC.

Parameterized complexity of control problems in Maximin election

Hong Liu, Daming Zhu, Hong Liu, 2010, Inf. Process. Lett..

An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies

Nan Liu, Binhai Zhu, Daming Zhu, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An O(n2) algorithm for signed translocation

Lusheng Wang, Daming Zhu, Shaohan Ma, 2005, J. Comput. Syst. Sci..

A New Pseudoknots Folding Algorithm for RNA Structure Prediction

Daming Zhu, Hengwu Li, Daming Zhu, 2005, COCOON.

A 1.4-Approximation Algorithm for Two-Sided Scaffold Filling

Jingjing Ma, Daming Zhu, Shu Zhang, 2017, FAW.

A (1+ε)-approximation algorithm for sorting by short block-moves

Binhai Zhu, Daming Zhu, Haitao Jiang, 2012, Theor. Comput. Sci..

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract)

Jin Zhao, Chi Zhang, Daming Zhu, 2017, ISBRA.

A (1.408+ε)-Approximation Algorithm for Sorting Unsigned Genomes by Reciprocal Translocations

Lusheng Wang, Binhai Zhu, Daming Zhu, 2014, FAW.

A New Algorithm for Intermediate Dataset Storage in a Cloud-Based Dataflow

Binhai Zhu, Daming Zhu, Jie Cheng, 2015, FAW.

Can a permutation be sorted by best short swaps?

Jingjing Ma, Daming Zhu, Shu Zhang, 2018, CPM.

A New Approximation Algorithm for Unsigned Translocation Sorting

Daming Zhu, Haitao Jiang, Lianrong Pu, 2016, WABI.

Sorting genomes by generalized translocations

Daming Zhu, Xiao Yin, 2013, Theor. Comput. Sci..

SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data

Daming Zhu, Lusheng Wang, Wenyan Gu, 2020, ISBRA.

Parameterized complexity of control by voter selection in Maximin, Copeland, Borda, Bucklin, and Approval election systems

Hong Liu, Daming Zhu, 2013, Theor. Comput. Sci..

Parameterized computational complexity of control problems in voting systems

Hong Liu, Daming Zhu, Haodi Feng, 2009, Theor. Comput. Sci..

DNA Encoding Method of Weight for Chinese Postman Problem

Daming Zhu, Aili Han, 2006, 2006 IEEE International Conference on Evolutionary Computation.

Approximation and Nonapproximability for the One-Sided Scaffold Filling Problem

Jingjing Ma, Daming Zhu, Haitao Jiang, 2015, COCOON.

Predicting scheme of RNA folding structure including pseudoknots

Daming Zhu, Hongwei Ma, Zhendong Liu, 2014, Int. J. Sens. Networks.

DNA Encoding Methods in the Field of DNA Computing

Daming Zhu, Aili Han, 2008, Computational Intelligence in Bioinformatics.

A (1.5 + ε)-Approximation Algorithm for Unsigned Translocation Distance

Lusheng Wang, Daming Zhu, Yun Cui, 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Hardness and methods to solve CLIQUE

Daming Zhu, Shaohan Ma, Junfeng Luan, 2008, Journal of Computer Science and Technology.

A New DNA Encoding Method for Traveling Salesman Problem

Daming Zhu, Aili Han, 2006, ICIC.

Notice of RetractionAn algorithm for gene-loss problem based on rNNI local search

Daming Zhu, Meng Cui, Daming Zhu, 2010, 2010 3rd International Conference on Computer Science and Information Technology.

The Algorithm for the Two-Sided Scaffold Filling Problem

Nan Liu, Daming Zhu, 2013, TAMC.

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry

Xiaowen Liu, Daming Zhu, Qiang Kou, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Dynamic Programming Algorithm For (1, 2)-Exemplar Breakpoint Distance

Lusheng Wang, Daming Zhu, Zhexue Wei, 2015, J. Comput. Biol..

Algorithms for the Well-Drilling Layout Problem

Daming Zhu, Meixia Qu, Aili Han, 2007, ICIC.

Minimum Common String Partition Revisited

Hong Zhu, Binhai Zhu, Daming Zhu, 2010, FAW.

Can a breakpoint graph be decomposed into none other than 2-cycles?

Yu Lin, Daming Zhu, Haitao Jiang, 2018, Theor. Comput. Sci..

Improved predicting algorithm of RNA pseudoknotted structure

Qionghai Dai, Daming Zhu, Zhendong Liu, 2019, Int. J. Comput. Sci. Eng..

New Heuristic Algorithm of RNA Structure Prediction Including Pseudoknots

Daming Zhu, Zhendong Liu, 2013, J. Comput..

Approximating Max NAE-k-SAT by anonymous local search

Hong Liu, Daming Zhu, Lianrong Pu, 2017, Theor. Comput. Sci..

Tight Bounds on Local Search to Approximate the Maximum Satisfiability Problems

Daming Zhu, Shaohan Ma, Pingping Zhang, 2011, COCOON.

A Bicriteria Approximation Algorithm for Generalized k-Multicut in Trees

Peng Zhang, Daming Zhu, Junfeng Luan, 2009, 2009 International Joint Conference on Computational Sciences and Optimization.

On Editing Graphs into 2-Club Clusters

Hong Liu, Peng Zhang, Daming Zhu, 2012, FAW-AAIM.

A Dynamic Programming Algorithm for Unsigned (1,2)-Exemplar Breakpoint Distance Problem with Span Constraint

Daming Zhu, Zhexue Wei, 2013, 2013 Sixth International Conference on Business Intelligence and Financial Engineering.

A (1.5 + ε)-Approximation Algorithm for Unsigned Translocation Distance

Lusheng Wang, Daming Zhu, Xiaowen Liu, 2008, TCBB.

PASA: Identifying More Credible Structural Variants of Hedou12

Daming Zhu, Xiangzhong Feng, Haodi Feng, 2018, ICIC.

An approximation algorithm for the Generalized k-Multicut problem

Peng Zhang, Daming Zhu, Junfeng Luan, 2012, Discret. Appl. Math..

Polynomial-Time Algorithm for Sorting by Generalized Translocations

Daming Zhu, Xiao Yin, 2009, TAMC.

An Approximation Algorithm for Sorting by Bounded Singleton Moves

Daming Zhu, Haodi Feng, Haitao Jiang, 2019, COCOON.

Mining structural variants of Heduo12 using paired-end reads

Jingjing Ma, Daming Zhu, Hai Yang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks

Hong Liu, Daming Zhu, Haodi Feng, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Improved Indel Detection Algorithm Based on Split-Read and Read-Depth

Daming Zhu, Hai Yang, Huiqiang Jia, 2018, ICIC.

A New Approximation Algorithm for the Maximum Stacking Base Pairs Problem from RNA Secondary Structures Prediction

Daming Zhu, Jiong Guo, Haitao Jiang, 2017, COCOA.

An approximation algorithm for genome sorting by reversals to recover all adjacencies

Peng Zhang, Yao Xu, Guohui Lin, 2019, J. Comb. Optim..

An O(N2) algorithm for signed translocation problem

Lusheng Wang, Daming Zhu, Shaohan Ma, 2005, APBC.

Sorting a Permutation by Best Short Swaps

Daming Zhu, Jiong Guo, Haodi Feng, 2021, Algorithmica.

SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data

Daming Zhu, Shiwei Sun, Aizhong Zhou, 2021, J. Comput. Biol..

A 43-approximation algorithm for the Maximum Internal Spanning Tree Problem

Daming Zhu, Lusheng Wang, Xingfu Li, 2021, J. Comput. Syst. Sci..

On the solution bound of two-sided scaffold filling

Binhai Zhu, Daming Zhu, Haitao Jiang, 2021, Theor. Comput. Sci..

An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies

Binhai Zhu, Daming Zhu, Haitao Jiang, 2013, TCBB.