S. Kozmon

发表

Plant Xyloglucan Xyloglucosyl Transferases and the Cell Wall Structure: Subtle but Significant

M. Hrmova, E. Stratilová, Barbora Stratilová, 2020, Molecules.

Three-dimensional homology model of GlcNAc-TV glycosyltransferase.

J. Koča, P. Janoš, I. Tvaroška, 2016, Glycobiology.

Molecular dynamic studies of amyloid-beta interactions with curcumin and Cu2+ ions

I. Tvaroška, S. Kozmon, 2015, Chemical Papers.

Another building block in the plant cell wall: Barley xyloglucan xyloglucosyl transferases link covalently xyloglucan and anionic oligosaccharides derived from pectin.

M. Hrmova, Soňa Garajová, Z. Pakanová, 2020, The Plant journal : for cell and molecular biology.

Fragmentation analysis of O-specific polysaccharide from bacteria Vibrio cholerae O139 by MALDI-TOF and LC/ESI-MS/MS

S. Bystrický, P. Baráth, Z. Pakanová, 2022, European journal of mass spectrometry.

Catalytic mechanism of glycosyltransferases: hybrid quantum mechanical/molecular mechanical study of the inverting N-acetylglucosaminyltransferase I.

I. Tvaroška, S. Kozmon, 2006, Journal of the American Chemical Society.

Influence of Trp flipping on carbohydrate binding in lectins. An example on Aleuria aurantia lectin AAL

J. Koča, P. Romano, S. Mishra, 2017, PloS one.

Reaction mechanism of β-apiosidase from Aspergillus aculeatus.

M. Mastihubová, V. Mastihuba, S. Kozmon, 2019, Food chemistry.

Definition of the Acceptor Substrate Binding Specificity in Plant Xyloglucan Endotransglycosylases Using Computational Chemistry

M. Hrmova, E. Stratilová, Barbora Stratilová, 2022, International journal of molecular sciences.

Synthesis, docking study and biological evaluation of ᴅ-fructofuranosyl and ᴅ-tagatofuranosyl sulfones as potential inhibitors of the mycobacterial galactan synthesis targeting the galactofuranosyltransferase GlfT2

K. Mikušová, M. Baráth, S. Kozmon, 2020, Beilstein journal of organic chemistry.

Role of solvent effects on nucleophilic substitution of 4H-pyran-4-one and its 2,6-dimethyl derivative with hydroxide ion in aqueous solution: ab initio and density functional theory studies on a supermolecular reaction model

W. Fabian, J. Kóňa, P. Zahradník, 2005 .

DFT Study on 3-Substituted Tetrahydropyran-2-yl Radicals

I. Tvaroška, S. Kozmon, 2006 .

The CH-π interaction in protein - carbohydrate binding: Bioinformatics and in vitro quantification.

J. Koča, M. Wimmerová, J. Houser, 2020, Chemistry.

Stacking Interactions between Carbohydrate and Protein Quantified by Combination of Theoretical and Experimental Methods

Jaroslav Koča, Sushil Kumar Mishra, Jan Komárek, 2012, PloS one.

Dispersion interactions of carbohydrates with condensate aromatic moieties: theoretical study on the CH-π interaction additive properties.

J. Koča, V. Spiwok, S. Kozmon, 2011, Physical chemistry chemical physics : PCCP.

Three-dimensional potential energy surface of selected carbohydrates' CH/π dispersion interactions calculated by high-level quantum mechanical methods.

J. Koča, V. Spiwok, S. Kozmon, 2011, Chemistry.

DFT and Docking Study of Potential Transition State Analogue Inhibitors of Glycosyltransferases

I. Tvaroška, S. Kozmon, L. Sihelnı́ková, 2008 .

An ABC transporter Wzm–Wzt catalyzes translocation of lipid-linked galactan across the plasma membrane in mycobacteria

M. Tesařová, P. Baráth, Jana Korduláková, 2021, Proceedings of the National Academy of Sciences.

Substrate-assisted catalytic mechanism of O-GlcNAc transferase discovered by quantum mechanics/molecular mechanics investigation.

J. Koča, M. Wimmerová, I. Tvaroška, 2012, Journal of the American Chemical Society.

Novel 1‐O‐Sulfono‐α‐d‐Fructofuranosyl Sulfones as Possible Inhibitors of Human GnT‐I Enzyme

M. Baráth, S. Kozmon, S. Šesták, 2020 .

Potential transition-state analogs for glycosyltransferases. Design and DFT calculations of conformational behavior.

I. Tvaroška, S. Kozmon, M. Raab, 2005, Carbohydrate research.

Synthesis of a β‐d‐Psicofuranosyl Sulfone and Inhibitory‐Activity Evaluation Against N‐Acetylglucosaminyltransferase I

Chun-Hung Lin, Shi Yan, J. Mucha, 2017 .

A QM/MM investigation of the catalytic mechanism of metal-ion-independent core 2 β1,6-N-acetylglucosaminyltransferase.

J. Koča, M. Wimmerová, I. Tvaroška, 2013, Chemistry.

N-(4-Substituted-benzoyl)-N'-(β-d-glucopyranosyl)ureas as inhibitors of glycogen phosphorylase: Synthesis and evaluation by kinetic, crystallographic, and molecular modelling methods.

S. Zographos, N. Oikonomakos, D. Leonidas, 2012, Bioorganic & Medicinal Chemistry.

Different QM/MM Approaches To Elucidate Enzymatic Reactions: Case Study on ppGalNAcT2.

J. Koča, T. Trnka, P. Janoš, 2016, Journal of chemical theory and computation.

Biosynthesis of Galactan in Mycobacterium tuberculosis as a Viable TB Drug Target?

K. Mikušová, S. Kozmon, Zuzana Konyariková, 2020, Antibiotics.

Characterization of a long-chain α-galactosidase from Papiliotrema flavescens

R. Vadkertiová, Soňa Garajová, J. Klaudiny, 2018, World Journal of Microbiology and Biotechnology.

Characterization of a long-chain α-galactosidase from Papiliotrema flavescens

R. Vadkertiová, Soňa Garajová, J. Klaudiny, 2018, World journal of microbiology & biotechnology.

Engineering the acceptor substrate specificity in the xyloglucan endotransglycosylase TmXET6.3 from nasturtium seeds (Tropaeolum majus L.)

Stanislav Kozmon, Eva Stratilová, M. Hrmova, 2019, Plant Molecular Biology.

Molecular Modeling Insights into the Structure and Behavior of Integrins: A Review

I. Tvaroška, J. Kóňa, S. Kozmon, 2023, Cells.

Stepwise Catalytic Mechanism via Short-Lived Intermediate Inferred from Combined QM/MM MERP and PES Calculations on Retaining Glycosyltransferase ppGalNAcT2

Jaroslav Koca, Tomás Trnka, Stanislav Kozmon, 2014, PLoS Comput. Biol..

Structural characterization of the Pet c 1.0201 PR-10 protein isolated from roots of Petroselinum crispum (Mill.) Fuss.

M. Hrmova, Soňa Garajová, P. Rehulka, 2020, Phytochemistry.

Comparison of docking methods for carbohydrate binding in calcium-dependent lectins and prediction of the carbohydrate binding mode to sea cucumber lectin CEL-III

A. Imberty, A. Imberty, S. Kozmon, 2008 .

Glucuronoxylan recognition by GH 30 xylanases: A study with enzyme and substrate variants.

P. Biely, V. Puchart, A. Malovíková, 2018, Archives of biochemistry and biophysics.

How Mycobacterium tuberculosis Galactofuranosyl Transferase 2 (GlfT2) Generates Alternating β-(1-6) and β-(1-5) Linkages: A QM/MM Molecular Dynamics Study of the Chemical Steps.

Jaroslav Koča, Stanislav Kozmon, J. Koča, 2018, Chemistry.

Engineering the acceptor substrate specificity in the xyloglucan endotransglycosylase TmXET6.3 from nasturtium seeds (Tropaeolum majus L.)

M. Hrmova, Soňa Garajová, J. Klaudiny, 2019, Plant Molecular Biology.

Exploring reaction pathways for O-GlcNAc transferase catalysis. A string method study.

Jaroslav Koča, Petr Kulhánek, Stanislav Kozmon, 2015, The journal of physical chemistry. B.

Application of MALDI-TOF Mass Spectrometry for Non-invasive Diagnostics of Mucopolysaccharidosis IIIA

A. Hlavatá, M. Nemčovič, Z. Pakanová, 2023, Journal of Inborn Errors of Metabolism and Screening.

I. Wilson, K. Paschinger, C. Breton, 2011, Glycobiology.

Glucuronoxylan recognition by GH 30 xylanases: A study with enzyme and substrate variants.

P. Biely, V. Puchart, A. Malovíková, 2018, Archives of biochemistry and biophysics.