P. Venkatraman

发表

Prion protein transcription is auto-regulated through dynamic interactions with G-quadruplex motifs in its own promoter.

M. A. Khan, P. Kumari, P. Vivekanandan, 2020, Biochimica et biophysica acta. Gene regulatory mechanisms.

Discovery of novel interacting partners of PSMD9, a proteasomal chaperone: Role of an Atypical and versatile PDZ-domain motif interaction and identification of putative functional modules

C. Verma, Indrajit Sahu, P. Venkatraman, 2014, FEBS open bio.

A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Y. Hooda, Shashidhar N. Rao, Suyog U. Pol, 2009, PLoS ONE.

Eukaryotic proteasomes cannot digest polyglutamine sequences and release them during degradation of polyglutamine-containing proteins.

Ronald Wetzel, Nobuyuki Nukina, A. Goldberg, 2004, Molecular cell.

Identification of a novel ATPase activity in 14‐3‐3 proteins – Evidence from enzyme kinetics, structure guided modeling and mutagenesis studies

A. Gautam, Padma P Nanaware, A. K. Somavarapu, 2014, FEBS letters.

Snapshots of urea‐induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution

P. Venkatraman, M. G. Mukund Sudharsan, Somavally Dalvi, 2022, Protein science : a publication of the Protein Society.

Direct Ubiquitin Independent Recognition and Degradation of a Folded Protein by the Eukaryotic Proteasomes-Origin of Intrinsic Degradation Signals

A. K. Singh Gautam, P. Venkatraman, S. Balakrishnan, 2012, PloS one.

A druggable pocket on PSMD10Gankyrin that can accommodate an interface peptide and doxorubicin.

R. Chikhale, Padma P Nanaware, P. Venkatraman, 2021, European journal of pharmacology.

Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells.

B. Imperiali, O. Bilsel, M. Sainlos, 2007, Nature chemical biology.

A novel role for the proteasomal chaperone PSMD9 and hnRNPA1 in enhancing IκBα degradation and NF‐κB activation – functional relevance of predicted PDZ domain–motif interaction

Indrajit Sahu, Rucha Gadre, P. Venkatraman, 2014, The FEBS journal.

Functional Significance Checking in Noisy Gene Regulatory Networks

Supratik Chakraborty, Sukanya Basu, S. Akshay, 2019, CP.

Structural interrogation of phosphoproteome identified by mass spectrometry reveals allowed and disallowed regions of phosphoconformation

David S. Palmer, A. Gautam, A. K. Somavarapu, 2014, BMC Structural Biology.

Phosphorylation promotes binding affinity of Rap-Raf complex by allosteric modulation of switch loop dynamics

S. Vemparala, P. Venkatraman, T Devanand, 2018, Scientific Reports.

PSMD9 ribosomal protein network maintains nucleolar architecture and WT p53 levels.

P. Venkatraman, Joel Christie, Sheikh Burhan Ud Din Farooqee, 2021, Biochemical and biophysical research communications.

From prediction to experimental validation: desmoglein 2 is a functionally relevant substrate of matriptase in epithelial cells and their reciprocal relationship is important for cell adhesion.

A. Gautam, P. Venkatraman, Nikhil Sangith, 2012, The Biochemical journal.

Puromycin‐sensitive aminopeptidase is the major peptidase responsible for digesting polyglutamine sequences released by proteasomes during protein degradation

A. Goldberg, P. Venkatraman, N. Bhutani, 2007, The EMBO journal.

Role of Sug1, a 19S proteasome ATPase, in the transcription of MHC I and the atypical MHC II molecules, HLA-DM and HLA-DO.

P. Venkatraman, Z. Zavala‐Ruiz, Yaritza Inostroza-Nieves, 2012, Immunology letters.

Structural insights on the effects of mutation of a charged binding pocket residue on phosphopeptide binding to 14‐3‐3ζ protein

S. Vemparala, P. Venkatraman, Somavally Dalvi, 2022, Proteins.

14–3‐3γ prevents centrosome duplication by inhibiting NPM1 function

T. Kundu, S. Dalal, P. Venkatraman, 2021, Genes to cells : devoted to molecular & cellular mechanisms.

14-3-3γ prevents centrosome duplication by inhibiting NPM1 function

T. Kundu, S. Dalal, P. Venkatraman, 2019, bioRxiv.

Enhanced proteasomal activity is essential for long term survival and recurrence of innately radiation resistant residual glioblastoma cells

A. Dutt, K. Datta, H. Gowda, 2018, Oncotarget.

Discovery of multiple interacting partners of gankyrin, a proteasomal chaperone and an oncoprotein—Evidence for a common hot spot site at the interface and its functional relevance

Padma P Nanaware, Manoj P Ramteke, Arun K Somavarapu, 2014, Proteins.

Assembly and beyond – The structure and functions of chaperones of the proteasome

P. Venkatraman, Prasanna Venkatraman, 2016 .

Cathepsins L and Z Are Critical in Degrading Polyglutamine-containing Proteins within Lysosomes*

A. Goldberg, R. Hourez, R. Piccirillo, 2012, The Journal of Biological Chemistry.

Novel Nexus with NFκB, β-catenin, and RB1 empowers PSMD10/Gankyrin to counteract TNF-α induced apoptosis establishing its oncogenic role.

P. Venkatraman, S. Mulla, Prasanna Venkatraman, 2022, The international journal of biochemistry & cell biology.

A novel pocket in 14-3-3epsilon is required to mediate specific complex formation with cdc25C and to inhibit cell cycle progression upon activation of checkpoint pathways.

S. Dalal, S. Kundu, P. Venkatraman, 2009, Experimental cell research.

The role of protein dynamics in thymidylate synthase catalysis: variants of conserved 2'-deoxyuridine 5'-monophosphate (dUMP)-binding Tyr-261.

Yaoquan Liu, R. Stroud, J. Finer-Moore, 2006, Biochemistry.

A novel determinant of PSMD9 PDZ binding guides the evolution of first generation of super binding peptides.

Mohan R. Pradhan, C. Verma, S. Kannan, 2019, Biochemistry.

Evolution of biophysical tools for quantitative protein interactions and drug discovery.

P. Venkatraman, M. Harish, Prasanna Venkatraman, 2021, Emerging topics in life sciences.

The polybasic insert, the RBD of the SARS-CoV-2 spike protein, and the feline coronavirus – evolved or yet to evolve

C. Verma, S. Kannan, P. Venkatraman, 2021, Biochemistry and Biophysics Reports.

Phosphorylation of interfacial phosphosite leads to increased binding of Rap-Raf complex

S. Vemparala, Susmita Ghosh, T. Devanand, 2021, bioRxiv.