Tomás Vinar

发表

Palindrome recognition using a multidimensional tape

Erik D. Demaine, Mohammad Taghi Hajiaghayi, Therese C. Biedl, 2003, Theor. Comput. Sci..

The most probable annotation problem in HMMs and its application to bioinformatics

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2007, J. Comput. Syst. Sci..

Inferring the Recent Duplication History of a Gene Cluster

Louxin Zhang, Webb Miller, Tomás Vinar, 2009, RECOMB Comparative Genomics Satellite Conference.

Optimal Spaced Seeds for Homologous Coding Regions

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2004, J. Bioinform. Comput. Biol..

Estimating effective DNA database size via compression

Tomás Vinar, Brona Brejová, Martina Visnovská, 2010, ITAT.

ExonHunter: a comprehensive approach to gene finding

Daniel G. Brown, Ming Li, Tomás Vinar, 2005, ISMB.

The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2004, WABI.

Finding Hidden Independent Sets in Interval Graphs

Erik D. Demaine, Alejandro López-Ortiz, Therese C. Biedl, 2003, COCOON.

CAGE: Combinatorial Analysis of Gene-Cluster Evolution

Louxin Zhang, Webb Miller, Tomás Vinar, 2010, J. Comput. Biol..

Probabilistic Approaches to Alignment with Tandem Repeats

Tomás Vinar, Brona Brejová, Michal Nánási, 2013, WABI.

Probabilistic approaches to alignment with tandem repeats

Tomás Vinar, Brona Brejová, Michal Nánási, 2013, Algorithms for Molecular Biology.

Routing in Carrier-Based Mobile Networks

Stefan Dobrev, Rastislav Kralovic, Tomás Vinar, 2011, SIROCCO.

Isometric gene tree reconciliation revisited

Dana Pardubská, Tomás Vinar, Brona Brejová, 2017, Algorithms for Molecular Biology.

Fast Computation of a String Duplication History under No-Breakpoint-Reuse - (Extended Abstract)

Gad M. Landau, Tomás Vinar, Brona Brejová, 2011, SPIRE.

Vector seeds: An extension to spaced seeds

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2005, J. Comput. Syst. Sci..

Efficient routing in carrier-based mobile networks

Stefan Dobrev, Rastislav Kralovic, Tomás Vinar, 2013, Theor. Comput. Sci..

Searching for the center of a circle

Alejandro López-Ortiz, Masud Hasan, Joseph Douglas Horton, 2002, CCCG.

Variants of Genes from the Next Generation Sequencing Data

Tomás Vinar, Brona Brejová, Martin Bobák, 2013, ITAT.

Aligning sequences with repetitive motifs

Tomás Vinar, Brona Brejová, Peter Kovác, 2012, ITAT.

How Big is that Genome? Estimating Genome Size and Coverage from k-mer Abundance Spectra

Tomás Vinar, Brona Brejová, Michal Hozza, 2015, SPIRE.

Isometric Gene Tree Reconciliation Revisited

Dana Pardubská, Tomás Vinar, Brona Brejová, 2016, WABI.

OB-Fold Recognition Combining Sequence and Structural Motifs

Martin Králik, Martin Macko, Tomás Vinar, 2016, ITAT.

Simplifying Flow Networks

Therese C. Biedl, Tomás Vinar, Brona Brejová, 2000, MFCS.

Nanopore base calling on the edge pdf

Tomás Vinar, Brona Brejová, Peter Peresíni, 2020, Bioinform..

Automated Segmentation of DNA Sequences with Complex Evolutionary Histories

Tomás Vinar, Brona Brejová, Michal Burger, 2011, WABI.

Finding Hidden Independent Sets in Interval Graphs

Erik D. Demaine, Alejandro López-Ortiz, Therese C. Biedl, 2003, COCOON.

GAML: genome assembly by maximum likelihood

Tomás Vinar, Brona Brejová, Vladimír Boza, 2014, Algorithms for Molecular Biology.

Homology search for genes

Dennis Shasha, Ming Li, Xuefeng Cui, 2007, ISMB/ECCB.

Reconstructing Histories of Complex Gene Clusters on a Phylogeny

Adam C. Siepel, Tomás Vinar, Brona Brejová, 2009, J. Comput. Biol..

A Better Method for Length Distribution Modeling in HMMs and Its Application to Gene Finding

Tomás Vinar, Brona Brejová, 2002, CPM.

Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2003, CPM.

Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern

Alejandro López-Ortiz, Daniel G. Brown, Tomás Vinar, 2005, CPM.

Reconstructing the Evolutionary History of Complex Human Gene Clusters

Yu Zhang, Webb Miller, Adam C. Siepel, 2008, RECOMB.

Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny pdf

Adam C. Siepel, Tomás Vinar, Brona Brejová, 2009, ArXiv.

Fishing in Read Collections: Memory Efficient Indexing for Sequence Assembly

Tomás Vinar, Brona Brejová, Vladimír Boza, 2015, SPIRE.

Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2003, WABI.

Sequence Annotation with HMMs: New Problems and Their Complexity

Tomás Vinar, Brona Brejová, Michal Nánási, 2015, Inf. Process. Lett..

RNA motif search with data-driven element ordering

Tomás Vinar, Brona Brejová, Ladislav Rampásek, 2016, BMC Bioinformatics.

Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2003, WABI.

GAML: genome assembly by maximum likelihood

Tomás Vinar, Brona Brejová, Vladimír Boza, 2014, Algorithms for Molecular Biology.

Predicting Gene Structures from Multiple RT-PCR Tests

Tomás Vinar, Brona Brejová, Jakub Kovác, 2009, WABI.

New Bounds for Motif Finding in Strong Instances

Daniel G. Brown, Tomás Vinar, Brona Brejová, 2006, CPM.

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters

Yu Zhang, Webb Miller, Adam C. Siepel, 2009, J. Comput. Biol..

The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection pdf

Tomás Vinar, Brona Brejová, Michal Nánási, 2010, CPM.

On-Line Viterbi Algorithm for Analysis of Long Biological Sequences

Rastislav Srámek, Tomás Vinar, Brona Brejová, 2007, WABI.

Using Sequence Ensembles for Seeding Alignments of MinION Sequencing Data

Tomás Vinar, Brona Brejová, Rastislav Rabatin, 2016, ITAT.

A Practical Algorithm for Ancestral Rearrangement Reconstruction

Tomás Vinar, Brona Brejová, Jakub Kovác, 2011, WABI.

DNA Sequence Segmentation Based on Local Similarity

Tomás Vinar, Brona Brejová, Martina Visnovská, 2013, ITAT.

Estimation of Proportions of SARS-CoV-2 Variants in a Mixed Sequencing Sample

Tomás Vinar, Brona Brejová, Askar Gafurov, 2021, ITAT.

Probabilistic Models of k-mer Frequencies (Extended Abstract)

Tomás Vinar, Brona Brejová, Askar Gafurov, 2021, CiE.

Alternative Base Callers Aid Real-time Analysis of SARS-CoV-2 Sequencing Runs

Tomás Vinar, Brona Brejová, Peter Peresíni, 2021, ITAT.

SnakeLines Workflow for SARS-CoV-2 Variant Detection from Next-Generation Sequencing Reads

Tomás Vinar, Brona Brejová, Jaroslav Budis, 2021, ITAT.

Dynamic Pooling Improves Nanopore Base Calling Accuracy

Tomás Vinar, Brona Brejová, Peter Peresíni, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.