Sofie Van Landeghem

发表

Event based text mining for integrated network construction

Yvan Saeys, Yves Van de Peer, Sofie Van Landeghem, 2009, MLSB.

Playing hide and seek on the genomic playground: unveiling biological function from literature

Sofie Van Landeghem, 2012 .

U-Compare bio-event meta-service: compatible BioNLP event extraction services

Jari Björne, Tapio Salakoski, Halil Kilicoglu, 2011, BMC Bioinformatics.

EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions

Tapio Salakoski, Yves Van de Peer, Filip Ginter, 2011, BioNLP@ACL.

Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures

Yves Van de Peer, Filip Ginter, Suwisa Kaewphan, 2013, BioNLP@ACL.

Highlights of the BioTM 2010 workshop on advances in bio text mining

Roser Morante, Walter Daelemans, Yvan Saeys, 2010, BMC Bioinformatics.

Analyzing text in search of bio-molecular events: a high-precision machine learning framework

Yvan Saeys, Bernard De Baets, Yves Van de Peer, 2009, BioNLP@HLT-NAACL.

explosion/spaCy: v2.1.6: Fix order of symbols that caused tag maps to be out-of-sync

Matthew Honnibal, György Orosz, Sofie Van Landeghem, 2019 .

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations

Tapio Salakoski, Yves Van de Peer, Filip Ginter, 2012, Adv. Bioinformatics.

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Yves Van de Peer, Dirk Inzé, Sofie Van Landeghem, 2016, BMC Bioinformatics.

Integration of Static Relations to Enhance Event Extraction from Text

Sampo Pyysalo, Yves Van de Peer, Tomoko Ohta, 2010, BioNLP@ACL.

Benchmarking machine learning techniques for the extraction of protein-protein interactions from text

Yvan Saeys, Bernard De Baets, Yves Van de Peer, 2008 .

Extracting protein-protein interactions from text using rich feature vectors and feature selection

Yvan Saeys, Bernard De Baets, Yves Van de Peer, 2008, SMBM 2008.

Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction

Bernard De Baets, Yves Van de Peer, Thomas Abeel, 2011, BioNLP@ACL.

Discriminative and informative features for biomolecular text mining with ensemble feature selection

Yvan Saeys, Yves Van de Peer, Thomas Abeel, 2010, Bioinform..

Semantically linking molecular entities in literature through entity relationships

Jari Björne, Tapio Salakoski, Bernard De Baets, 2012, BMC Bioinformatics.

HIGH‐PRECISION BIO‐MOLECULAR EVENT EXTRACTION FROM TEXT USING PARALLEL BINARY CLASSIFIERS

Yvan Saeys, Bernard De Baets, Yves Van de Peer, 2011, Comput. Intell..

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

Sampo Pyysalo, Yves Van de Peer, Filip Ginter, 2015, Bioinform..

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations

Jari Björne, Tapio Salakoski, Sampo Pyysalo, 2012, BioNLP@HLT-NAACL.

EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction

Tapio Salakoski, Yves Van de Peer, Filip Ginter, 2013, BioNLP@ACL.

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Yves Van de Peer, Fabio Fiorani, Aalt D. J. van Dijk, 2015 .

Additional file 2 of Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois, 2016 .

explosion/spaCy: v3.1.2: Improved spancat component and various bugfixes

Matthew Honnibal, Sofie Van Landeghem, Adriane Boyd, 2021 .

explosion/spaCy: v3.0.6: assemble CLI, Matcher alignments, training from streamed corpora and many bug fixes

Matthew Honnibal, Sofie Van Landeghem, Adriane Boyd, 2021 .

explosion/spaCy: v2.3.6: Bug fixes and base support for Amharic

Matthew Honnibal, Sofie Van Landeghem, Adriane Boyd, 2021 .

Integrating Large-Scale Text Mining and Co-Expression Networks : Targeting NADP ( H ) Metabolism in E . coli with Event Extraction

Yves Van de Peer, Filip Ginter, Suwisa Kaewphan, 2012 .

Detecting miRNA Mentions and Relations in Biomedical

Sofie Van Landeghem, Filip Ginter, Robert Leaman, 2017 .

CyEVEX : Literature-scale network integration and visualization through Cytoscape

Sofie Van Landeghem, T. Salakoski, Filip Ginter, 2012 .

Integrated network construction using event based text mining

Sofie Van Landeghem, 2009 .

Semantically linking molecular entities in literature through entity relationships

Sofie Van Landeghem, B. Baets, Jari Björne, 2012, BMC Bioinformatics.

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Sofie Van Landeghem, Thomas Van Parys, D. Inzé, 2016, BMC Bioinformatics.

Multi hash embeddings in spaCy

Sofie Van Landeghem, Anders Søgaard, Adriane Boyd, 2022, ArXiv.

Extracting protein-protein interactions from text using rich feature vectors and feature selection

Sofie Van Landeghem, B. Baets, Y. Saeys, 2008, SMBM 2008.