Tunca Doğan

发表

Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites.

Nurcan Tuncbag, Heval Atas, Tunca Doğan, 2018, Methods in molecular biology.

CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

Volkan Atalay, Rabie Saidi, Heval Atas, 2020, bioRxiv.

Evaluation of Methods for Protein Representation Learning: A Quantitative Analysis

Muammer Albayrak, Aybar C. Acar, Tunca Doğan, 2020, bioRxiv.

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences

Tunca Doğan, Tunca Dogan, 2018, PeerJ.

Towards networking biomedical data using the CROssBAR API

Maria Jesus Martin, Volkan Atalay, Rabie Saidi, 2020 .

Activities at the Universal Protein Resource (UniProt)

María Martín, Peter B. McGarvey, Y Wang, 2013, Nucleic Acids Res..

UniProt: A hub for protein information

María Martín, Peter B. McGarvey, Y Wang, 2015 .

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences

Tunca Doğan, Tunca Dogan, 2018, PeerJ.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations

Volkan Atalay, Tunca Doğan, María Martín, 2018, bioRxiv.

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Volkan Atalay, Tunca Doğan, Rengul Cetin-Atalay, 2019, Scientific Reports.

Large‐scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants

Rabie Saidi, Tunca Doğan, Tulin Ersahin, 2018, Proteins.

Automatic Identification of Highly Conserved Family Regions and Relationships in Genome Wide Datasets Including Remote Protein Sequences

Tunca Doğan, Bilge Karaçalı, Tunca Dogan, 2013, PloS one.