Carl L Brooks

Approaching protein design with multisite λ dynamics: Accurate and scalable mutational folding free energies in T4 lysozyme

Jonah Z. Vilseck, R. L. Hayes, Carl L Brooks, 2018, Protein science : a publication of the Protein Society.

Predicting structurally conserved contacts for homologous proteins using sequence conservation filters

M. Michino, Carl L Brooks, 2009, Proteins.

The flexible C‐terminal arm of the Lassa arenavirus Z‐protein mediates interactions with multiple binding partners

Eric R. May, R. Armen, Aristotle M. Mannan, 2010, Proteins.

Addressing Intersite Coupling Unlocks Large Combinatorial Chemical Spaces for Alchemical Free Energy Methods.

Jonah Z. Vilseck, R. L. Hayes, Carl L Brooks, 2022, Journal of chemical theory and computation.

pyCHARMM: Embedding CHARMM Functionality in a Python Framework.

Xiaorong Liu, Josh Buckner, A. Chakravorty, 2023, Journal of chemical theory and computation.

Accurate reconstruction of all‐atom protein representations from side‐chain‐based low‐resolution models

M Feig, P Rotkiewicz, A Kolinski, 2000, Proteins.

TMPRSS2 Inhibitor Discovery Facilitated through an In Silico and Biochemical Screening Platform

A. Mapp, Amanda L. Peiffer, Julie M. Garlick, 2023, ACS medicinal chemistry letters.

Selection pressures on evolution of ribonuclease H explored with rigorous free–energy–based design

S. Marqusee, Carl L Brooks, C. Nixon, 2024, Proceedings of the National Academy of Sciences of the United States of America.