Jinlong Ru

发表

Challenges of Studying the Human Virome - Relevant Emerging Technologies.

Z. Taranu, Mohammadali Khan Mirzaei, Sarah Schulz, 2020, Trends in microbiology.

DeepsmirUD: Precise prediction of regulatory effects on miRNA expression mediated by small molecular compounds using competing deep learning frameworks

A. Cribbs, Xia Wang, Jinlong Ru, 2022, bioRxiv.

DeepsmirUD: Precise prediction of regulatory effects on miRNA expression mediated by small molecular compounds using competing deep learning frameworks

A. Cribbs, Zihao Chen, Suyuan Chen, 2022, bioRxiv.

Toxic/Bioactive Peptide Synthesis Genes Rearranged by Insertion Sequence Elements Among the Bloom-Forming Cyanobacteria Planktothrix

J. Blom, Ruibao Li, R. Kurmayer, 2022, Frontiers in Microbiology.

Altered virome structrue and function characterization in Helicobacter pylori-driven colorectal carcinogenesis and H. pylori eradication

M. Gerhard, Jinling Xue, Jinlong Ru, 2022, bioRxiv.

Replidec - Use naive Bayes classifier to identify virus lifecycle from metagenomics data

L. Deng, Jinlong Ru, Mohammadali Khan Mirzaei, 2022, bioRxiv.

Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments.

Lichao Mou, Yiming Jiang, Haiying Huang, 2018, The Science of the total environment.

TCMSP: a database of systems pharmacology for drug discovery from herbal medicines

Wei Zhou, Peng Li, Ling Yang, 2014, Journal of Cheminformatics.

Large-scale Direct Targeting for Drug Repositioning and Discovery

Yan Li, Yuan Wang, Ziyin Wu, 2015, Scientific Reports.

Insights from systems pharmacology into cardiovascular drug discovery and therapy

Peng Li, Chao Huang, Ling Yang, 2014, BMC Systems Biology.

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner

Z. Taranu, M. Kabir, Mohammadali Khan Mirzaei, 2020, Cell host & microbe.

Large-scale exploration and analysis of drug combinations

Jianxin Chen, Wei Zhou, Peng Li, 2015, Bioinform..

Differences in Gut Virome Related to Barrett Esophagus and Esophageal Adenocarcinoma

M. Mirzaei, K. Janssen, M. Quante, 2021, Microorganisms.

Small molecule-mediated targeting of microRNAs for drug discovery: Experiments, computational techniques, and disease implications.

A. Cribbs, Dapeng Xiong, Jinlong Ru, 2023, European journal of medicinal chemistry.

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes

L. Deng, R. Kurmayer, Yiming Jiang, 2019, Front. Microbiol..

DeepsmirUD: Prediction of Regulatory Effects on microRNA Expression Mediated by Small Molecules Using Deep Learning

A. Cribbs, Zihao Chen, Suyuan Chen, 2023, International journal of molecular sciences.

ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis

Mohammadali Khan Mirzaei, Jinling Xue, Jinlong Ru, 2023, Gut microbes.

Unveiling the hidden role of aquatic viruses in hydrocarbon pollution bioremediation.

Jinling Xue, Jinlong Ru, Li Deng, 2023, Journal of hazardous materials.

Targeted Therapy for EWS-FLI1 in Ewing Sarcoma

Yan Li, Busheng Xue, Jinlong Ru, 2023, Cancers.

DeepdlncUD: Predicting regulation types of small molecule inhibitors on modulating lncRNA expression by deep learning

Jinlong Ru, Jianfeng Sun, Xia Wang, 2023, Comput. Biol. Medicine.

Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection

M. Gerhard, Jinling Xue, Jinlong Ru, 2023, Gut microbes.

Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments.

Lichao Mou, Yiming Jiang, Haiying Huang, 2018, The Science of the total environment.

Bacteria and bacteriophage consortia are associated with protective intestinal metabolites in patients receiving stem cell transplantation.

M. Verbeek, A. Hiergeist, K. Kleigrewe, 2024, Nature cancer.