Matthew B. Sullivan

发表

Discovery of several thousand highly diverse circular DNA viruses

Michael J. Tisza, S. Resnick, A. Segall, 2019, bioRxiv.

Disparate patterns of genetic divergence in three widespread corals across a pan-Pacific environmental gradient highlights species-specific adaptation trajectories

S. Sunagawa, J. Poulain, P. Wincker, 2022, bioRxiv.

A genomic catalog of Earth’s microbiomes

Vincent J. Denef, Natalia N. Ivanova, Paramvir S. Dehal, 2020, Nature Biotechnology.

kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase

José P. Faria, C. Henry, S. H. Chan, 2022, bioRxiv.

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Corinne Da Silva, Tom O. Delmont, G. Cochrane, 2022, Cell genomics.

Tara Oceans: towards global ocean ecosystems biology

G. Cochrane, P. Bork, S. Sunagawa, 2020, Nature Reviews Microbiology.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Francisco M. Cornejo-Castillo, G. Cochrane, P. Bork, 2017, Scientific Data.

MetaboDirect: An Analytical Pipeline for the processing of FTICR-MS-based Metabolomics Data

M. Duhaime, N. Hess, M. Tfaily, 2022, bioRxiv.

Abundant deep ocean heterotrophic bacteria are culturable

S. Sunagawa, P. Wincker, T. Gojobori, 2022, bioRxiv.

Pervasive tandem duplications and convergent evolution shape coral genomes

Corinne Da Silva, S. Sunagawa, J. Poulain, 2023, Genome Biology.

Ocean-wide comparisons of mesopelagic planktonic community structures

P. Bork, S. Sunagawa, J. Poulain, 2021, bioRxiv.

Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

Diel cycle of sea spray aerosol concentration over vast areas of the tropical Pacific Ocean and the Caribbean Sea

E. Boss, Y. Rudich, G. Gorsky, 2020 .

Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

S. Sunagawa, J. Poulain, P. Wincker, 2023, npj Biodiversity.

Scientists’ warning to humanity: microorganisms and climate change

J. Huisman, T. Crowther, A. Classen, 2019, Nature Reviews Microbiology.

From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals, Pocillopora and Porites

S. Sunagawa, J. Poulain, P. Wincker, 2022, bioRxiv.

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M. Sullivan, B. Bolduc, Pengfei Liu, 2020, bioRxiv.

A functional microbiome catalog crowdsourced from North American rivers

Annika C. Mosier, José P. Faria, Janaka N. Edirisinghe, 2023, bioRxiv.

Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics

Tom O. Delmont, G. Cochrane, P. Bork, 2020, bioRxiv.

Pan-Arctic plankton community structure and its global connectivity

O. Jaillon, P. Wincker, Samuel Chaffron, 2023, Elementa: Science of the Anthropocene.

Insights into biotic and abiotic modulation of ocean mesopelagic communities 1 2

Gehlen, P. Bork, S. Sunagawa, 2021 .

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

T. Borody, A. Khoruts, J. Caporaso, 2017, Microbiome.

Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines

J. Deming, B. Temperton, H. Maughan, 2023, Microbiome.

Repository of the Max Delbrück Center for Molecular Medicine (MDC) in the Helmholtz Association

Luis Pedro Coelho, Corinne Da Silva, S. Sunagawa, 2023 .

Descriptor : Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

P. Bork, S. Sunagawa, J. Raes, 2017 .

MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets

Christine L. Sun, M. Krupovic, B. Bolduc, 2023, ISME communications.

Different environmental response strategies in sympatric corals from Pacific Islands

S. Sunagawa, J. Poulain, P. Wincker, 2023, Communications Earth & Environment.

Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation.

S. Sunagawa, P. Wincker, C. Pedrós-Alió, 2023, ISME communications.

Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

S. Sunagawa, P. Wincker, D. Allemand, 2023, Communications Earth & Environment.

Interrogating the viral dark matter of the rumen ecosystem with a global virome database

Ming Yan, Zhongtang Yu, Zongjun Li, 2023, Nature communications.

Population ecology and potential biogeochemical impacts of ssDNA and dsDNA soil viruses along a permafrost thaw gradient

Christine L. Sun, S. Saleska, B. Woodcroft, 2023, bioRxiv.

Genomic evidence for global ocean plankton biogeography shaped 1 by large-scale current systems 2

S. Sunagawa, J. Poulain, O. Jaillon, 2019 .

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

P. Bork, S. Sunagawa, J. Poulain, 2018, Nature Communications.

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

S. Sunagawa, J. Poulain, E. Boss, 2022, bioRxiv.

MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data

M. Duhaime, N. Hess, M. Tfaily, 2023, Microbiome.

Single-molecule epitranscriptomic analysis of full-length HIV-1 RNAs reveals functional roles of site-specific m6As

Nagaraja Tirumuru, Matthew B. Sullivan, Shi-Yeon Kim, 2024, Nature microbiology.

Viral potential to modulate microbial methane metabolism varies by habitat

Matthew B. Sullivan, Petra Pjevac, Stephan Köstlbacher, 2024, Nature communications.