Theo A. Knijnenburg

发表

Artifacts of Markov blanket filtering based on discretized features in small sample size applications

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2006, Pattern Recognit. Lett..

Combining Dependent P-values with an Empirical Adaptation of Brown’s Method

David L. Gibbs, Ilya Shmulevich, William Poole, 2015, bioRxiv.

Creating gene set activity profiles with time-series expression data

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2008, Int. J. Bioinform. Res. Appl..

Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression

Ilya Shmulevich, William Poole, Theo A. Knijnenburg, 2017, PLoS Comput. Biol..

Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2006, CMSB.

EPEPT: A web service for enhanced P-value estimation in permutation tests

Ilya Shmulevich, John Boyle, Hector Rovira, 2011, BMC Bioinformatics.

Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation

Marcel J. T. Reinders, Maarten Clements, Theo A. Knijnenburg, 2007, Genom. Proteom. Bioinform..

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

Stephen A. Ramsey, Ilya Shmulevich, Vladimir Litvak, 2010, Bioinform..

Fewer permutations, more accurate P-values

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Ilya Shmulevich, 2009, Bioinform..

Fastbreak: a tool for analysis and visualization of structural variations in genomic data

Ilya Shmulevich, John Boyle, Hector Rovira, 2012, EURASIP J. Bioinform. Syst. Biol..

Combinatorial influence of environmental parameters on transcription factor activity

Marcel J. T. Reinders, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2008, ISMB.

Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

Francesco Iorio, Lodewyk F. A. Wessels, Theo A. Knijnenburg, 2016, Scientific Reports.

Multiscale Representation of Genomic Signals

Peter W. Laird, Stephen A. Ramsey, Ilya Shmulevich, 2014, Nature Methods.

A multilevel pan-cancer map links gene mutations to cancer hallmarks

Lodewyk F. A. Wessels, Ilya Shmulevich, Theo A. Knijnenburg, 2015, Chinese journal of cancer.