Sven Rahmann

Alexander Schliep, Sven Rahmann, David C. Torney, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping

Sven Rahmann, Jens Quedenfeld, 2017, WABI.

Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0

Sven Rahmann, Jan Baumbach, Tobias Wittkop, 2010, J. Integr. Bioinform..

Editorial message: special track on bioinformatics

Mathew J. Palakal, Sven Rahmann, Birong Liao, 2005, SAC '05.

T-Reg Comparator: an analysis tool for the comparison of position weight matrices

Martin Vingron, Sven Rahmann, Stefan Roepcke, 2005, Nucleic Acids Res..

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Sven Rahmann, Jörg Ingo Baumbach, Dominik Kopczynski, 2017, PloS one.

On the Distribution of the Number of Missing Words in Random Texts

Sven Rahmann, Eric Rivals, Eric Rivals, 2003, Combinatorics, Probability and Computing.

A modular computational framework for automated peak extraction from ion mobility spectra

Sven Rahmann, Jörg Ingo Baumbach, Dominik Kopczynski, 2014, BMC Bioinformatics.

Integer Linear Programs for Discovering Approximate Gene Clusters

Sven Rahmann, Gunnar W. Klau, S. Rahmann, 2006, WABI.

Algorithmen für das Design von DNA-Microarrays

Sven Rahmann, 2004, Ausgezeichnete Informatikdissertationen.

Combinatorics of periods in strings

Sven Rahmann, Eric Rivals, Eric Rivals, 2001, J. Comb. Theory A.

Probabilistic Arithmetic Automata and Their Applications

Sven Rahmann, Tobias Marschall, Hans-Michael Kaltenbach, 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs

Nils M. Kriege, Sven Rahmann, Marianna D'Addario, 2012, GCB.

Algorithms for subsequence combinatorics

Sven Rahmann, Hui Wang, Cees H. Elzinga, 2008, Theor. Comput. Sci..

SimLoRD: Simulation of Long Read Data

Sven Rahmann, Bianca K. Stöcker, Johannes Köster, 2016, Bioinform..

Efficient exact motif discovery

Sven Rahmann, Tobias Marschall, 2009, Bioinform..

Massively parallel read mapping on GPUs with PEANUT pdf

Sven Rahmann, Johannes Köster, J. Köster, 2014, ArXiv.

Subsequence Combinatorics and Applications to Microarray Production, DNA Sequencing and Chaining Algorithms

Sven Rahmann, S. Rahmann, 2006, CPM.

Snakemake--a scalable bioinformatics workflow engine.

Sven Rahmann, Johannes Köster, J. Köster, 2012, Bioinformatics.

Rapid large-scale oligonucleotide selection for microarrays

Sven Rahmann, S. Rahmann, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes

Andreas Tauch, Sven Rahmann, Jan Baumbach, 2006, J. Integr. Bioinform..

CoryneCenter – An online resource for the integrated analysis of corynebacterial genome and transcriptome data

Sven Rahmann, Alexander Goesmann, Alfred Pühler, 2007, BMC Systems Biology.

An optimization approach to detect differentially methylated regions from Whole Genome Bisulfite Sequencing data

Sven Rahmann, Christopher Schröder, Nina Hesse, 2015, PeerJ Prepr..

The shortest common supersequence problem in a microarray production setting

Sven Rahmann, 2003, ECCB.

Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks

Andreas Tauch, Sven Rahmann, Jan Baumbach, 2008, Briefings Bioinform..

Modeling evolutionary fitness for DNA motif discovery

Oliver Kramer, Sven Rahmann, Tobias Marschall, 2009, GECCO.

Peak modeling for Ion mobility spectrometry measurements

Sven Rahmann, Jörg Ingo Baumbach, Dominik Kopczynski, 2012, 2012 Proceedings of the 20th European Signal Processing Conference (EUSIPCO).

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms

Andreas Tauch, Sven Rahmann, Jan Baumbach, 2009, BMC Systems Biology.

Discovering motifs that induce sequencing errors

Alexander Schönhuth, Sven Rahmann, Ivan G. Costa, 2013, BMC Bioinformatics.

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree

Alexander Schliep, Sven Rahmann, Alexander Schliep, 2006, ISMB.

Structural Identifiability in Low-Rank Matrix Factorization

Yasmin A. Rios-Solis, Sven Rahmann, Epameinondas Fritzilas, 2008, COCOON.

Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata

Sven Rahmann, Inke Herms, 2008, WABI.

IMS2 - An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath

Sven Rahmann, Sita Lange, Jörg Ingo Baumbach, 2007, J. Integr. Bioinform..

Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions

Sven Rahmann, Christine Gräfe, 2004, Bioinform..

Better GeneChip microarray Layouts by Combining Probe Placement and Embedding

Sven Rahmann, Sérgio A. de Carvalho, S. Rahmann, 2008, J. Bioinform. Comput. Biol..

Fast Large Scale Oligonucleotide Selection Using the Longest Common Factor Approach

Sven Rahmann, S. Rahmann, 2003, J. Bioinform. Comput. Biol..

Extension and Robustness of Transitivity Clustering for Protein–Protein Interaction Network Analysis

Sven Rahmann, Sebastian Böcker, Richard Röttger, 2011, Internet Math..

Partitioning biological data with transitivity clustering

Dorothea Emig, Mario Albrecht, Jens Stoye, 2010, Nature Methods.

A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification

Sven Rahmann, Christopher Schröder, S. Rahmann, 2016, Algorithms for Molecular Biology.

An Algorithm to Compute the Character Access Count Distribution for Pattern Matching Algorithms

Sven Rahmann, Tobias Marschall, T. Marschall, 2011, Algorithms.

Non-symmetric score matrices and the detection of homologous transmembrane proteins

Sven Rahmann, Tobias Müller, Marc Rehmsmeier, 2001, ISMB.

Structural Identifiability in Low-Rank Matrix Factorization

Yasmin A. Rios-Solis, Martin Milanic, Sven Rahmann, 2008, Algorithmica.

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

Sven Rahmann, Jan Baumbach, Tobias Wittkop, 2007, BMC Bioinformatics.

Combinatorics of Periods in Strings

Sven Rahmann, Eric Rivals, 2001, ICALP.

Solving the Minimum String Cover Problem

Sven Rahmann, Tobias Marschall, Stefan Canzar, 2012, ALENEX.

Probabilistic Arithmetic Automata and Their Application to Pattern Matching Statistics

Sven Rahmann, Tobias Marschall, 2008, CPM.

Variant tolerant read mapping using min-hashing pdf

Sven Rahmann, Jens Quedenfeld, S. Rahmann, 2017, ArXiv.

Exact Analysis of Pattern Matching Algorithms with Probabilistic Arithmetic Automata pdf

Sven Rahmann, Tobias Marschall, T. Marschall, 2010, ArXiv.

Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances

Sven Rahmann, Tobias Müller, Matthias Wolf, 2003, German Conference on Bioinformatics.

Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning

Sven Rahmann, Sérgio A. de Carvalho, 2006, WABI.

Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology

Sven Rahmann, S. Rahmann, 2003, WABI.

Algorithms for probe selection and DNA microarray design

Sven Rahmann, S. Rahmann, Sven Rahmann Februar, 2004 .

Rapid Large-Scale Oligonucleotide Selection for Microarrays

Sven Rahmann, 2002, WABI.

Spalter: A Meta Machine Learning Approach to Distinguish True DNA Variants from Sequencing Artefacts

Sven Rahmann, Till Hartmann, 2018, WABI.

Exact ILP solutions for phylogenetic minimum flip problems

Markus Chimani, Sven Rahmann, Sebastian Böcker, 2010, BCB '10.

Using the Expectation Maximization Algorithm with Heterogeneous Mixture Components for the Analysis of Spectrometry Data pdf

Sven Rahmann, Dominik Kopczynski, Dominik Kopczynski, 2014, ArXiv.

Deep Metazoan Phylogeny

Sven Rahmann, Tobias Müller, Matthias Wolf, 2007, Silico Biol..

Genome analysis

Sven Rahmann, Johannes Köster, J. Köster, 2022 .

Microarray Layout as Quadratic Assignment Problem

Sven Rahmann, Sérgio A. de Carvalho, 2006, German Conference on Bioinformatics.

Discovering Biomarkers for Myocardial Infarction from SELDI-TOF Spectra

Sven Rahmann, Christian Höner zu Siederdissen, Susanne Ragg, 2006, GfKl.

Exact and Efficient Computation of the Expected Number of Missing and Common Words in Random Texts

Sven Rahmann, Eric Rivals, Eric Rivals, 2000, CPM.

Martin Vingron, Sven Rahmann, Utz J. Pape, 2008, Bioinform..

Functional inference from non-random distributions of conserved predicted transcription factor binding sites

Martin Vingron, Sven Rahmann, Christoph Dieterich, 2004, ISMB/ECCB.

Massively parallel read mapping on GPUs with the q-group index and PEANUT

Sven Rahmann, Johannes Köster, J. Köster, 2014, PeerJ.

Rapid T-cell receptor interaction grouping with ting

Sven Rahmann, Felix Mölder, Ulrik Stervbo, 2021, Bioinform..

Sustainable data analysis with Snakemake

Sven Rahmann, Felix Mölder, Sven Nahnsen, 2021, F1000Research.

GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data

Sven Rahmann, Ana Pombo, Roland F. Schwarz, 2021, Bioinform..

Fast lightweight accurate xenograft sorting

Sven Rahmann, Jens Zentgraf, 2021, Algorithms Mol. Biol..

Detecting high-scoring local alignments in pangenome graphs

Faraz Hach, Jens Stoye, Sven Rahmann, 2021, Bioinform..

An Optimization Approach to Detect Differentially Methylated Regions from Whole Genome Bisulfite Sequencing Data

Sven Rahmann, Christopher Schröder, Nina Hesse, 2015 .

Mutational dynamics between primary and relapse neuroblastomas

Sven Rahmann, Barbara Hero, Christopher Schröder, 2015, Nature Genetics.

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Stefan Wallner, Sven Rahmann, Christopher Schröder, 2017, Epigenetics & Chromatin.

On the Power of Profiles for Transcription Factor Binding Site Detection

Martin Vingron, Sven Rahmann, M. Vingron, 2003, Statistical applications in genetics and molecular biology.

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

Sven Rahmann, Thomas Dandekar, Tobias Müller, 2004, BMC Evolutionary Biology.

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

Sven Rahmann, Tobias Marschall, Stefan Schreiber, 2010, Nucleic acids research.

Differentiation of chronic obstructive pulmonary disease (COPD) including lung cancer from healthy control group by breath analysis using ion mobility spectrometry

Sven Rahmann, Jörg Ingo Baumbach, Sasidhar Maddula, 2010 .

Statistics of cleavage fragments in random weighted strings

Sven Rahmann, Sebastian Böcker, Hans-Michael Kaltenbach, 2005 .

Integer Linear Programming Techniques for Discovering Approximate Gene Clusters

Sven Rahmann, Gunnar W. Klau, 2007 .

On Common Intervals with Errors

Jens Stoye, Cedric Chauve, Sven Rahmann, 2006 .

Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete.

Sven Rahmann, Epameinondas Fritzilas, Bernhard Horsthemke, 2009, Human molecular genetics.

Epigenetic dynamics of monocyte-to-macrophage differentiation

Stefan Wallner, Thomas Lengauer, Sven Rahmann, 2016, Epigenetics & Chromatin.

The Expected Number of Missing Words in a Random Text

Sven Rahmann, Eric Rivals, Eric Rivals, 2000 .

MoRAine - A web server for fast computational transcription factor binding motif re-annotation

Sven Rahmann, Jan Baumbach, Jochen Weile, 2008, J. Integr. Bioinform..

N6-Adenosine Methylation in MiRNAs

Sven Rahmann, Bernhard Horsthemke, S. Rahmann, 2015, PloS one.

Application of Neural Networks in Diagnosing Cancer Disease using Demographic Data

Sven Rahmann, Jan Baumbach, Frank Berthold, 2010 .

CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.

Andreas Tauch, Sven Rahmann, Jan Baumbach, 2007, Journal of biotechnology.

Online Abelian Pattern Matching

Jens Stoye, Sven Rahmann, Tahir Ejaz, 2008 .

Healthy ageing men have normal reproductive function but display germline-specific molecular changes

Sven Rahmann, Bernhard Horsthemke, Sven Berres, 2019, medRxiv.

From raw ion mobility measurements to disease classification: a comparison of analysis processes

Sven Rahmann, Jörg Ingo Baumbach, Dominik Kopczynski, 2015 .