Li-Fang Chu

发表

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization

James A. Thomson, Christina Kendziorski, Rhonda Bacher, 2020, bioRxiv.

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Bret Duffin, James A. Thomson, Christina Kendziorski, 2020, PloS one.

SCnorm: A quantile-regression based approach for robust normalization of single-cell RNA-seq data

Ning Leng, James A. Thomson, Christina Kendziorski, 2016, bioRxiv.

OEFinder: A user interface to identify and visualize ordering effects in single-cell RNA-seq data

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2015 .

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments

Ning Leng, James A. Thomson, Christina Kendziorski, 2018, BMC Bioinformatics.

Network Inference with Granger Causality Ensembles on Single-Cell Transcriptomic Data

Anthony Gitter, Li-Fang Chu, Ron Stewart, 2019, bioRxiv.

Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2017 .

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Bret Duffin, James A. Thomson, Christina Kendziorski, 2019, PloS one.

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

Colin N. Dewey, Chris Barry, Bianca Habermann, 2013, PLoS Comput. Biol..

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

Ning Leng, James A. Thomson, Ron M. Stewart, 2016, Bioinform..

scDD: A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2016 .

SCPattern: A statistical approach to identify and classify expression changes in single cell RNA-seq experiments with ordered conditions

Ning Leng, James A. Thomson, Christina Kendziorski, 2016, bioRxiv.

Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.

James A. Thomson, Li-Fang Chu, Ron Stewart, 2018, Developmental biology.

Oscope identifies oscillatory genes in unsynchronized single cell RNA-seq experiments

Ning Leng, James A. Thomson, Ron M. Stewart, 2015, Nature Methods.