Zhi Yan

发表

Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes

L. Nakhleh, H. Ogilvie, Zhi Yan, 2021, Systematic biology.

Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes

Huw A. Ogilvie, L. Nakhleh, H. Ogilvie, 2020, bioRxiv.

“Correcting” gene trees to be more like species trees increases topological error when incomplete lineage sorting is high

Huw A. Ogilvie, L. Nakhleh, H. Ogilvie, 2022, bioRxiv.

Comparing Inference under the MSC versus the MSC-with-Recombination

Huw A. Ogilvie, L. Nakhleh, H. Ogilvie, 2022, bioRxiv.

Current progress and open challenges for applying deep learning across the biosciences

Cameron R. Wolfe, Michael G. Nute, Richard Baraniuk, 2022, Nature Communications.

Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs

L. Nakhleh, Megan L. Smith, Peng Du, 2021, Systematic biology.

Species Tree Inference on Data with Paralogs is Accurate Using Methods Intended to Deal with Incomplete Lineage Sorting

L. Nakhleh, Megan L. Smith, Peng Du, 2018 .

Practical Aspects of Phylogenetic Network Analysis Using PhyloNet

Xinhao Liu, Zhi Yan, Zhen Cao, 2019, bioRxiv.

Comparing Inference under the Multispecies Coalescent with and without Recombination.

Huw A. Ogilvie, L. Nakhleh, H. Ogilvie, 2023, Molecular phylogenetics and evolution.

“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error

Huw A. Ogilvie, L. Nakhleh, Zhi Yan, 2023, Genome biology and evolution.