Marina Sirota

发表

Precision annotation of digital samples in NCBI’s gene expression omnibus

Dexter Hadley, Maryam Panahiazar, Sanchita Bhattacharya, 2017, Scientific Data.

Enabling precision medicine in neonatology, an integrated repository for preterm birth research

Joe Leigh Simpson, Elizabeth Thomson, Antonis Rokas, 2018, Scientific Data.

A bioinformatics guide for molecular biologists

Marina Sirota, Sarah Aerni, 2014 .

Human Computation of Big Data in Biomedicine: Making STAR annotations for large scale functional characterization of disease

Atul J. Butte, Bin Chen, Hyojung Paik, 2015, AMIA.

Synergistic drug combinations from electronic health records and gene expression

Maya B. Mathur, Trevor J. Hastie, Nigam H. Shah, 2016, J. Am. Medical Informatics Assoc..

A Classifier-based approach to identify genetic similarities between diseases

Atul J. Butte, Serafim Batzoglou, Marc A. Schaub, 2009, Bioinform..

Applications of Machine Learning to In Silico Quantification of Chemicals without Analytical Standards

Marina Sirota, Tracey J. Woodruff, Randolph R. Singh, 2020, J. Chem. Inf. Model..

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Bruno Agard, Robert Tibshirani, Nima Aghaeepour, 2018, Bioinform..

Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov

Bin Chen, Atul J. Butte, Menghua Wu, 2014, Pacific Symposium on Biocomputing.

Calculating genomic windows for GWAS lead SNPs

Daniel Himmelstein, Marina Sirota, Greg Way, 2015 .

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

Atul J. Butte, Purvesh Khatri, Marina Sirota, 2012, PLoS Comput. Biol..

Fighting disease with data

Bin Chen, Marina Sirota, Bin Chen, 2015, XRDS.

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++

Serafim Batzoglou, Gregory M. Cooper, Arend Sidow, 2010, PLoS Comput. Biol..

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants

Russ B. Altman, Atul J. Butte, Steven C. Bagley, 2016, PLoS Comput. Biol..

Author Correction: Enabling precision medicine in neonatology, an integrated repository for preterm birth research

Atul J. Butte, Elizabeth Thomson, Antonis Rokas, 2018, Scientific Data.

Data Integration for Immunology

Marina Sirota, Idit Kosti, Silvia Pineda, 2020 .

A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets

Bin Chen, Atul J. Butte, Marina Sirota, 2014, Pacific Symposium on Biocomputing.

dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit

Marina Sirota, Gabriela K. Fragiadakis, Daniel G. Bunis, 2020, Bioinform..

A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth

Michael P Snyder, Nikolaos A Patsopoulos, Nadav Rappoport, 2018, Scientific Reports.

Autoimmune Disease Classification by Inverse Association with SNP Alleles

Atul J. Butte, Serafim Batzoglou, Marc A. Schaub, 2009, PLoS genetics.

Meta-Analysis of Maternal and Fetal Transcriptomic Data Elucidates the Role of Adaptive and Innate Immunity in Preterm Birth

Ishan Paranjpe, Marina Sirota, Tracey J. Woodruff, 2018, Front. Immunol..

Cumulative Risk and Impact Modeling on Environmental Chemical and Social Stressors

Amy Padula, Marina Sirota, Tracey J. Woodruff, 2018, Current Environmental Health Reports.

Compendia of Public Gene Expression Data Discovery and Preclinical Validation of Drug Indications Using

Alexander A. Morgan, Atul J. Butte, Joel T. Dudley, 2011 .

A Suspect Screening Method for Characterizing Multiple Chemical Exposures among a Demographically Diverse Population of Pregnant Women in San Francisco

Marina Sirota, Rachel Morello-Frosch, Tracey J. Woodruff, 2018, Environmental health perspectives.

A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data

Marina Sirota, Leonard Apeltsin, M. Sirota, 2017, Scientific Reports.

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research

Bin Chen, Atul J Butte, Marina Sirota, 2015, BMC Medical Genomics.

Comprehensive analysis of normal adjacent to tumor transcriptomes

Atul J Butte, Hyojung Paik, Dvir Aran, 2017, Nature Communications.

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets

Bin Chen, Atul J. Butte, Hyojung Paik, 2017, Nature Communications.

Divergent Patterns of Mitochondrial and Nuclear Ancestry Are Associated with the Risk for Preterm Birth

Marina Sirota, Gary M Shaw, Neal Sondheimer, 2017, The Journal of pediatrics.

Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes

Alexander A. Morgan, Rong Chen, Atul J. Butte, 2012, Proceedings of the National Academy of Sciences.

Supplementary Materials for Computational Repositioning of the Anticonvulsant Topiramate for Inflammatory Bowel Disease

Alexander A. Morgan, Atul J. Butte, Pankaj Jay Pasricha, 2011 .

Productive common light chain libraries yield diverse panels of high affinity bispecific antibodies

Marina Sirota, Shobha Potluri, Arvind Rajpal, 2017, mAbs.