Erik Arner

发表

assay information of the mouse qualitycontrol samples for HeliScopeCAGE

Mariko Okada, Hans Clevers, Kim M. Summers, 2017 .

ReDiT: Repeat Discrepancy Tagger-a shotgun assembly finishing aid

Björn Andersson, Martti T. Tammi, Erik Arner, 2004, Bioinform..

Automatic identification of small molecules that promote cell conversion and reprogramming

Xin Gao, Diego di Bernardo, Akira Hasegawa, 2020, bioRxiv.

Solving repeat problems in shotgun sequencing

Erik Arner, E. Arner, 2006 .

Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs

Björn Andersson, Tom Britton, Martti T. Tammi, 2002, Bioinform..

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment

Mariko Okada, Xin Gao, Yi Huang, 2017, Bioinform..

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions

Björn Andersson, Martti T. Tammi, Erik Arner, 2006, BMC Bioinformatics.

sample information of the human samples

Mariko Okada, Hans Clevers, Kim M. Summers, 2017 .

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response

Carsten O. Daub, Mariko Okada, Piero Carninci, 2015, PLoS Comput. Biol..

GRAT - genome-scale rapid alignment tool

Björn Andersson, Daniel Nilsson, Martti T. Tammi, 2007, Comput. Methods Programs Biomed..

TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences

Björn Andersson, Martti T. Tammi, Erik Arner, 2003, Comput. Methods Programs Biomed..

Optimization of turn-back primers in isothermal amplification

Carsten O. Daub, Yoshihide Hayashizaki, Yuki Kawai, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Five of the ten repeat groups in the simulated dataset after automatic sorting and manual correction

Björn Andersson, Martti T. Tammi, Erik Arner, 2011 .

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2015, PloS one.

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.

Jun Kawai, Yoshihide Hayashizaki, Yuki Hasegawa, 2010, Molecular immunology.

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Masaru Tomita, Jun Kawai, Piero Carninci, 2010, BMC Genomics.

Dynamics of fat cell turnover in humans

Tom Britton, Peter Arner, Erik Arner, 2008, Nature.

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2015, PLoS Comput. Biol..

A framework for identification of on- and off-target transcriptional responses to drug treatment

Erik Arner, Takahiro Arakawa, Satoshi Takizawa, 2019, Scientific Reports.

FANTOM5 CAGE profiles of human and mouse samples

Hiroshi Tanaka, Geoffrey J Faulkner, Sarah Klein, 2017, Scientific Data.

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation

Yoshihide Hayashizaki, Erik Arner, Atsutaka Kubosaki, 2009, Genome Biology.

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Geoffrey J Faulkner, Piero Carninci, Yoshihide Hayashizaki, 2017, PLoS genetics.

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2018, Open Biology.

Discriminative identification of transcriptional responses of promoters and enhancers after stimulus

Panos Kalnis, Vladimir B. Bajic, Erik Arner, 2016, Nucleic acids research.

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

Vladimir B. Bajic, Sebastian Schmeier, Piero Carninci, 2015, Nucleic acids research.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, EBioMedicine.

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Mathieu Blanchette, Nicholas M. Luscombe, Boris Lenhard, 2020, Nature Communications.