Shane C. Burgess

发表

Gene Model Detection Using Mass Spectrometry

Nan Wang, Bindu Nanduri, Mark L. Lawrence, 2010, Proteome Bioinformatics.

ProtQuant: a tool for the label-free quantification of MudPIT proteomics data

Nan Wang, Bindu Nanduri, Susan M. Bridges, 2007, BMC Bioinformatics.

Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks

Changhe Yuan, Nan Wang, Bindu Nanduri, 2008, BIOCOMP.

The Gene Ontology: enhancements for 2011

María Martín, Juancarlos Chan, Paul W. Sternberg, 2011, Nucleic Acids Res..

The Proteogenomic Mapping Tool

Brandon M. Malone, Nan Wang, Yoginder S. Dandass, 2011, BMC Bioinformatics.

Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes

Nan Wang, Mark L. Lawrence, Susan M. Bridges, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213

James M. Watt, Bindu Nanduri, Mark L. Lawrence, 2012, BMC Bioinformatics.

An automated proteomic data analysis workflow for mass spectrometry

Bindu Nanduri, Shane C. Burgess, Ranjit Kumar, 2009, BMC Bioinformatics.

Prediction of peptides observable by mass spectrometry applied at the experimental set level

Bindu Nanduri, Susan M. Bridges, Shane C. Burgess, 2007, BMC Bioinformatics.

Facilitating functional annotation of chicken microarray data

Shane C. Burgess, Fiona M. McCarthy, Ranjit Kumar, 2009, BMC Bioinformatics.

Nuclear Factor kappa B is central to Marek’s Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo

Shane C. Burgess, Ken Pendarvis, Shyamesh Kumar, 2012, BMC Systems Biology.

Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research

Yoginder S. Dandass, Mark L. Lawrence, Susan M. Bridges, 2008, BMC Bioinformatics.

Structural and functional-annotation of an equine whole genome oligoarray

Shane C. Burgess, Fiona M. McCarthy, Lauren A. Bright, 2009 .

An Ensemble Method for Identifying Robust Features for Biomarker Discovery

Susan M. Bridges, Shane C. Burgess, Diana Chan, 2008 .

AgBase: a unified resource for functional analysis in agriculture

Nan Wang, Susan M. Bridges, Shane C. Burgess, 2006, Nucleic Acids Res..

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays

Shane C. Burgess, Fiona M. McCarthy, Jay H. Konieczka, 2009, BMC Bioinformatics.

The Gene Ontology project in 2008

Giorgio Valle, Kimberly Van Auken, Paul W. Sternberg, 2007, Nucleic Acids Res..

Prediction of Cell Penetrating Peptides by Support Vector Machines

Susan M. Bridges, Shane C. Burgess, William S. Sanders, 2011, PLoS Comput. Biol..

The Gene Ontology in 2010: extensions and refinements

Giorgio Valle, Juancarlos Chan, Paul W. Sternberg, 2009, Nucleic Acids Res..

TAAPP: Tiling Array Analysis Pipeline for Prokaryotes

Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess, 2011, Genom. Proteom. Bioinform..

Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility

Bindu Nanduri, Shane C. Burgess, Abdullah Kaya, 2008, BMC Systems Biology.

GOModeler- A tool for hypothesis-testing of functional genomics datasets

T. J. Jankun-Kelly, Bindu Nanduri, Susan M. Bridges, 2010, BMC Bioinformatics.

AgBase: supporting functional modeling in agricultural organisms

Hui Wang, Susan M. Bridges, Shane C. Burgess, 2010, Nucleic Acids Res..

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

Shane C. Burgess, Fiona M. McCarthy, Susan J. Lamont, 2010, PloS one.

RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336”

Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess, 2012, PloS one.

Identifying Blood Biomarkers and Physiological Processes That Distinguish Humans with Superior Performance under Psychological Stress

Shane C. Burgess, Russell Stocker, S. Burgess, 2009, PloS one.

Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines

Shane C. Burgess, Fiona M. McCarthy, Daniel G. Peterson, 2012, PloS one.

Effects of Subminimum Inhibitory Concentrations of Antibiotics on the Pasteurella multocida Proteome: A Systems Approach

Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess, 2008, Comparative and functional genomics.

Genotype-Dependent Tumor Regression in Marek’s Disease Mediated at the Level of Tumor Immunity

Shane C. Burgess, S. Burgess, J. Buza, 2009, Cancer Microenvironment.

Comparative Proteomic Analysis of Listeria monocytogenes Strains F2365 and EGD

Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess, 2008, Applied and Environmental Microbiology.

Transcriptome profile of Bovine Respiratory Disease pathogen Mannheimia haemolytica PHL213

Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess, 2012 .

Preliminary evaluation of laser-induced breakdown spectroscopy for tissue classification

Shane C. Burgess, Jagdish P. Singh, S. Burgess, 2009 .

Genome Sequence of the Chemolithoautotrophic Bacterium Oligotropha carboxidovorans OM5T

Mark L. Lawrence, Shane C. Burgess, Susan Bridges, 2008, Journal of bacteriology.

Identification of the Neoplastically Transformed Cells in Marek's Disease Herpesvirus-Induced Lymphomas: Recognition by the Monoclonal Antibody AV37

Shane C. Burgess, S. Burgess, T. Davison, 2002, Journal of Virology.