Stephen F. Altschul

发表

Outlier Detection in BLAST Hits

Mihai Pop, Nidhi Shah, Stephen F. Altschul, 2017, WABI.

The effectiveness of position- and composition-specific gap costs for protein similarity searches

E. Michael Gertz, Aleksandar Stojmirovic, Stephen F. Altschul, 2008, ISMB.

An assessment of substitution scores for protein profile-profile comparison

Xugang Ye, Guoli Wang, Stephen F. Altschul, 2011, Bioinform..

A structure-based method for protein sequence alignment

Alejandro A. Schäffer, Anna R. Panchenko, Stephen H. Bryant, 2005, Bioinform..

Basic local alignment search tool. Journal of Molecular Biology

Eugene W. Myers, Webb Miller, David J. Lipman, 1990 .

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations

Stephen F. Altschul, Andrew F. Neuwald, S. Altschul, 2016, PLoS Comput. Biol..

Detecting SubtleSequence Signals:.A Gibbs Sampling StrategyforMultiple Alignment

Charles E. Lawrence, Stephen F. Altschul, 1993 .

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions

Stephen F. Altschul, Yi-Kuo Yu, S. Altschul, 2005, Bioinform..

Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space

Jordan L. Boyd-Graber, Viet-An Nguyen, Stephen F. Altschul, 2013, J. Comput. Biol..

A Gibbs sampler for the detection of subtle motifs in multiple sequences

John C. Wootton, Mark S. Boguski, Jun S. Liu, 1994, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

Local Alignment (with Affine Gap Weights)

Henry Leung, Bruce W. Erickson, Stephen F. Altschul, 2008, Encyclopedia of Algorithms.

Initial Cluster Analysis

Stephen F. Altschul, Andrew F. Neuwald, 2018, J. Comput. Biol..

Compositional Adjustment of Dirichlet Mixture Priors

Xugang Ye, Stephen F. Altschul, Yi-Kuo Yu, 2010, J. Comput. Biol..

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

John C. Wootton, Stephen F. Altschul, Yi-Kuo Yu, 2010, PLoS Comput. Biol..

Outlier detection in BLAST hits

Mihai Pop, Nidhi Shah, Stephen F. Altschul, 2018, Algorithms for Molecular Biology.

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

Alejandro A. Schäffer, L. Aravind, Chris P. Ponting, 1999, Bioinform..

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties

Stephen F. Altschul, Andrew F. Neuwald, S. Altschul, 2016, PLoS Comput. Biol..

On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison

Xugang Ye, Stephen F. Altschul, Yi-Kuo Yu, 2011, J. Comput. Biol..

Evaluating the Statistical Significance of Multiple Distinct Local Alignments

Stephen F. Altschul, S. Altschul, 1997 .

The Complexity of the Dirichlet Model for Multiple Alignment Data

Stephen F. Altschul, Yi-Kuo Yu, 2011, J. Comput. Biol..

Log-odds sequence logos

Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul, 2015, Bioinform..

eCOMPASS: evaluative comparison of multiple protein alignments by statistical score

Stephen F. Altschul, Andrew F. Neuwald, Bryan D. Kolaczkowski, 2021, Bioinform..

Characterization of Gene Expression in Resting and Activated Mast Cells

Stephen F. Altschul, Henry Metzger, Huaxian Chen, 1998, The Journal of experimental medicine.

Optimal sequence alignment using affine gap costs

Bruce W. Erickson, Stephen F. Altschul, S. Altschul, 1986 .

PSI-BLAST pseudocounts and the minimum description length principle

Alejandro A. Schäffer, Richa Agarwala, E. Michael Gertz, 2008, Nucleic acids research.