David E. Shaw

发表

The role of Cascade, a cycle-based simulation infrastructure, in designing the Anton special-purpose supercomputers

J. P. Grossman, Brian Towles, Joseph A. Bank, 2013, 2013 50th ACM/EDAC/IEEE Design Automation Conference (DAC).

Unifying on-chip and inter-node switching within the Anton 2 network

J. P. Grossman, Brian Towles, David E. Shaw, 2014, 2014 ACM/IEEE 41st International Symposium on Computer Architecture (ISCA).

DADO: ATREE-STRUCXUREDMACRINE ARCRITECTURE FoRERODUcTIONSYSTEMS*

Salvatore J. Stolfo, David E. Shaw, 1982 .

Exploiting 162-Nanosecond End-to-End Communication Latency on Anton

Edmond Chow, J. P. Grossman, Brian Towles, 2010, 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis.

Architectures and algorithms for millisecond-scale molecular dynamics simulations of proteins

David E. Shaw, 2008, 2008 41st IEEE/ACM International Symposium on Microarchitecture.

Accelerating Parallel Analysis of Scientific Simulation Data via Zazen

David E. Shaw, Ron O. Dror, Federico D. Sacerdoti, 2010, FAST.

Early formal verification of conditional coverage points to identify intrinsically hard-to-verify logic

David E. Shaw, Ron O. Dror, Michael Theobald, 2008, 2008 45th ACM/IEEE Design Automation Conference.

A detailed and flexible cycle-accurate Network-on-Chip simulator

Nan Jiang, George Michelogiannakis, William J. Dally, 2013, 2013 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS).

NON-VON's applicability to three AI task area

David E. Shaw, D. E. Shaw, 1985, IJCAI 1985.

Anton, a special-purpose machine for molecular dynamics simulation

John L. Klepeis, J. P. Grossman, Brian Towles, 2007, ISCA '07.

Erraturm - A fast, scalable method for the parallel evaluation of distance-limited pairwise particle interactions

David E. Shaw, 2005, J. Comput. Chem..

Using Long-Timescale Molecular Dynamics Simulations to Benchmark Enhanced Sampling Methods

David E. Shaw, Stefano Piana, Albert C. Pan, 2015 .

Desmond Performance on a Cluster of Multicore Processors

Edmond Chow, David E. Shaw, Federico D. Sacerdoti, 2008 .

Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation

J. P. Grossman, David E. Shaw, Ron O. Dror, 2008, 2008 IEEE 14th International Symposium on High Performance Computer Architecture.

Computationally efficient molecular dynamics integrators with improved sampling accuracy

David E. Shaw, Huafeng Xu, Kevin J. Bowers, 2012 .

On the Long-Term Implications of Database Machine Research

David E. Shaw, 1981 .

Applications of VLSI technology in a massively parallel machine

David E. Shaw, 1987 .

Anton, A Special-Purpose Molecular Simulation Machine

David E. Shaw, Ron O. Dror, Cliff Young, 2011, Encyclopedia of Parallel Computing.

Tight Certification Techniques for Digit-by-Rounding Algorithms with Application to a New 1/sqrt(x) Design

David E. Shaw, Ping Tak Peter Tang, Ron O. Dror, 2011, 2011 IEEE 20th Symposium on Computer Arithmetic.

Zonal methods for the parallel execution of range-limited N-body simulations

David E. Shaw, Ron O. Dror, Kevin J. Bowers, 2007, J. Comput. Phys..

Exercising the NON-VON Primary Processing Subsystem

David E. Shaw, Bruce K. Hillyer, 1983 .

Anton: a special-purpose machine that achieves a hundred-fold speedup in biomolecular simulations

David E. Shaw, 2013, HPDC '13.

Filtering, Reductions and Synchronization in the Anton 2 Network

J. P. Grossman, Brian Towles, David E. Shaw, 2015, 2015 IEEE International Parallel and Distributed Processing Symposium.

Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose Machine

Edmond Chow, J. P. Grossman, Joseph A. Bank, 2013, 2013 IEEE 27th International Symposium on Parallel and Distributed Processing.

An Eight-Processor Chip for a Massively Parallel Machine

David E. Shaw, Theodore M. Sabety, 1984 .

Simulation and embedded software development for Anton, a parallel machine with heterogeneous multicore ASICs

J. P. Grossman, Joseph A. Bank, David E. Shaw, 2008, CODES+ISSS '08.

PROLOG on the DADO Machine: A Parallel System For High-Speed Logic Programming

Salvatore J. Stolfo, David E. Shaw, Stephen Taylor, 1983 .

Desmond/GPU Performance as of November 2014

Michael Bergdorf, David E. Shaw, Charles A. Rendleman, 2014 .

Overcoming Communication Latency Barriers in Massively Parallel Scientific Computation

Edmond Chow, J. P. Grossman, Brian Towles, 2011, IEEE Micro.

A Conversation with David E. Shaw

Pat Hanrahan, David E. Shaw, 2009 .

Program-Understanding Systems

David R. Barstow, Douglas B. Lenat, David E. Shaw, 1974 .

Radix-8 Digit-by-Rounding: Achieving High-Performance Reciprocals, Square Roots, and Reciprocal Square Roots

David E. Shaw, Ping Tak Peter Tang, Ron O. Dror, 2011, 2011 IEEE 20th Symposium on Computer Arithmetic.

Hardware support for fine-grained event-driven computation in Anton 2

J. P. Grossman, Brian Towles, Joseph A. Bank, 2013, ASPLOS '13.

A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories

John L. Klepeis, David E. Shaw, Ron O. Dror, 2008, 2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis.

Anton: A Specialized Machine for Millisecond-Scale Molecular Dynamics Simulations of Proteins

David E. Shaw, D. Shaw, 2009, 2009 19th IEEE Symposium on Computer Arithmetic.

OLD TWON- MUD INLET BRIDGE, REHABILITATION OF A TIMBER STRUCTURE WITH TIRE SHREDS

Dana N. Humphrey, David E. Shaw, Jeffrey J. Tweedie, 2004 .

Hierarchical simulation-based verification of Anton, a special-purpose parallel machine

J. P. Grossman, Brian Towles, David E. Shaw, 2008, 2008 IEEE International Conference on Computer Design.

The NON-VON Database Machine: An Overview

Salvatore J. Stolfo, Hussein A. H. Ibrahim, David E. Shaw, 1981 .

Improved Twiddle Access for Fast Fourier Transforms

David E. Shaw, Ron O. Dror, Kevin J. Bowers, 2010, IEEE Transactions on Signal Processing.

PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results

David E. Shaw, Richard A. Friesner, Steven L. Dixon, 2006, J. Comput. Aided Mol. Des..

Millisecond-scale molecular dynamics simulations on Anton

John L. Klepeis, Kresten Lindorff-Larsen, Edmond Chow, 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis.

Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor

David E. Shaw, Anton Arkhipov, Yibing Shan, 2014, PLoS Comput. Biol..

Allocation and Manipulation of Records in the NON-VON Supercomputer

David E. Shaw, Bruce K. Hillyer, 1983 .

Anton: A specialized ASIC for molecular dynamics

David E. Shaw, Ron O. Dror, John K. Salmon, 2008, 2008 IEEE Hot Chips 20 Symposium (HCS).

Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters

John L. Klepeis, Edmond Chow, David E. Shaw, 2006, SC.

Elucidating membrane protein function through long-timescale molecular dynamics simulation

David E. Shaw, Ron O. Dror, Morten O. Jensen, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories

John L. Klepeis, David E. Shaw, Charles A. Rendleman, 2008, 2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis.

A deep-learning view of chemical space designed to facilitate drug discovery

David E. Shaw, Brian Cole, Hunter M. Nisonoff, 2020, J. Chem. Inf. Model..

Automated Event Detection and Activity Monitoring in Long Time-Scale Molecular Dynamics

David E. Shaw, Ron O. Dror, Willy Wriggers, 2009 .

Development of a multiple regression equation to predict judo performance with the help of selected structural and body composition variables

David E. Shaw, B. K. Kavanal, 1995, Proceedings of the First Regional Conference, IEEE Engineering in Medicine and Biology Society and 14th Conference of the Biomedical Engineering Society of India. An International Meet.

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation

John L. Klepeis, J. P. Grossman, David E. Shaw, 2008, 2008 IEEE 14th International Symposium on High Performance Computer Architecture.

Programming the DADO Machine: An Introduction to PPL/M

Salvatore J. Stolfo, Daniel P. Miranker, David E. Shaw, 1982 .

A Highly Parallel VLSI-Based Subsystem of the NON-VONDatabase Machine

Hussein A. H. Ibrahim, David E. Shaw, Gio Wiederhold, 1981 .

Inferring LISP Programs From Examples

David E. Shaw, William R. Swartout, C. Cordell Green, 1975, IJCAI.

Correction: Systematic Validation of Protein Force Fields against Experimental Data

David E. Shaw, Ron O. Dror, Stefano Piana, 2013, PLoS ONE.

Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer

J. P. Grossman, Brian Towles, Joseph A. Bank, 2014, SC14: International Conference for High Performance Computing, Networking, Storage and Analysis.