Robert Patro

发表

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

Prashant Pandey, Fatemeh Almodaresi, Michael Ferdman, 2019, RECOMB.

Identification of alternative topological domains in chromatin

Robert Patro, Darya Filippova, Geet Duggal, 2014, Algorithms for Molecular Biology.

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes

Robert Patro, Nitish Gupta, Avi Srivastava, 2015, bioRxiv.

Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis

Fatemeh Almodaresi, Robert Patro, Laraib Malik, 2018, Bioinform..

Optimizing Read Reversals for Sequence Compression - (Extended Abstract)

Steven Skiena, Esther M. Arkin, Joseph S. B. Mitchell, 2015, WABI.

Global network alignment using multiscale spectral signatures

Robert Patro, Carl Kingsford, Carl Kingsford, 2012, Bioinform..

Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms pdf

Robert Patro, Carl Kingsford, Stephen M. Mount, 2013, ArXiv.

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

Prashant Pandey, Fatemeh Almodaresi, Robert Patro, 2017, bioRxiv.

A space and time-efficient index for the compacted colored de Bruijn graph

Fatemeh Almodaresi, Robert Patro, Avi Srivastava, 2017, bioRxiv.

Squeakr: An Exact and Approximate k-mer Counting System

Michael A. Bender, Prashant Pandey, Rob Johnson, 2017, bioRxiv.

Saliency Guided Summarization of Molecular Dynamics Simulations

Robert Patro, Amitabh Varshney, Cheuk Yiu Ip, 2010, Scientific Visualization: Advanced Concepts.

Reference-based compression of short-read sequences using path encoding

Robert Patro, Carl Kingsford, Carl Kingsford, 2015, Bioinform..

Parsimonious reconstruction of network evolution

Robert Patro, Carl Kingsford, Emre Sefer, 2011, Algorithms for Molecular Biology.

Quark enables semi‐reference‐based compression of RNA‐seq data

Robert Patro, Hirak Sarkar, Robert Patro, 2017, Bioinform..

Social Snapshot: A System for Temporally Coupled Social Photography

Robert Patro, Amitabh Varshney, Cheuk Yiu Ip, 2011, IEEE Computer Graphics and Applications.

A Survey of Some Recent Results in Comptuer Graphics

Robert Patro, 2006 .

The missing models: a data-driven approach for learning how networks grow

Robert Patro, Darya Filippova, Geet Duggal, 2012, KDD.

Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes pdf

Robert Patro, Avi Srivastava, Hirak Sarkar, 2016, ArXiv.

A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing

Robert Patro, Amitabh Varshney, André Maximo, 2011, Graph. Model..

Resolving spatial inconsistencies in chromosome conformation measurements

Samir Khuller, Robert Patro, Darya Filippova, 2013, Algorithms for Molecular Biology.

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph

Michael A. Bender, Prashant Pandey, Rob Johnson, 2017, Bioinform..

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

Julio Saez-Rodriguez, Mitja Lustrek, Robert Patro, 2016, BMC Bioinformatics.

Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin

Michelle Girvan, Robert Patro, Geet Duggal, 2013, BCB.

Rich Chromatin Structure Prediction from Hi-C Data

Robert Patro, Laraib Malik, Laraib Malik, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Resolving Spatial Inconsistencies in Chromosome Conformation Data

Samir Khuller, Robert Patro, Darya Filippova, 2012, WABI.

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

Robert Patro, Hirak Sarkar, Laraib Malik, 2017, bioRxiv.

Multiscale Identification of Topological Domains in Chromatin

Robert Patro, Darya Filippova, Geet Duggal, 2013, WABI.

Salient Frame Detection for Molecular Dynamics Simulations

Dianne P. O'Leary, Robert Patro, Youngmin Kim, 2011, Scientific Visualization: Interactions, Features, Metaphors.

Modeling and Visualization of Human Activities for Multicamera Networks

Rama Chellappa, Aswin C. Sankaranarayanan, Pavan K. Turaga, 2009, EURASIP J. Image Video Process..

Predicting protein interactions via parsimonious network history inference

Robert Patro, Carl Kingsford, Carl Kingsford, 2013, Bioinform..

Improved data-driven likelihood factorizations for transcript abundance estimation

Fatemeh Almodaresi, Robert Patro, Avi Srivastava, 2017, Bioinform..

MDMap: A system for data-driven layout and exploration of molecular dynamics simulations

Robert Patro, Amitabh Varshney, Cheuk Yiu Ip, 2011, 2011 IEEE Symposium on Biological Data Visualization (BioVis)..

Real-Time Approximate Subsurface Scattering

Robert Patro, 2007 .

Computationally Comparing Biological Networks and Reconstructing Their Evolution

Robert Patro, Robert Patro, 2012 .

A General-Purpose Counting Filter: Making Every Bit Count

Michael A. Bender, Prashant Pandey, Rob Johnson, 2017, SIGMOD Conference.

Efficient Index Maintenance Under Dynamic Genome Modification pdf

Robert Patro, Nitish Gupta, Carl Kingsford, 2016, ArXiv.

Parsimonious Reconstruction of Network Evolution

Robert Patro, Carl Kingsford, Emre Sefer, 2011, WABI.

Data-dependent bucketing improves reference-free compression of sequencing reads

Robert Patro, Carl Kingsford, 2015, Bioinform..